Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02983 ATGGAAGGGTTTGGAATGACCTCGGATCTTAGCAGAACTGGTGCTGCGGAAAGAGACATTGAGCAGGCCATTACTGCATTGAAAAAAGGGGCTTGCTTGCTCAAGTATGGAAGGAGGGGAAAGCCCAAGTTTTGCCCCTTTCGACTTTCTAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCACCTTAAACTGAGTCATGTCTCTAGAATTATATCTGGACAACGGACGCCTATCTTTCAAAGATATCCGCGGCCTGAGAAGGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGATTTGATATGCAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCACGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAAGCTAACAGTCCTCGAACATACACAAGAAGAAGTTCCCCTTTACATTCTCCATTTGGTAGTAATGAGAGCCTGCAAAAGGATAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAGAGCCCCCCTAAAAATGGCTTGGATAAAGCATTAGATGTGGTCTTGTATGCTGTTCCTCAAAAAAGTTTCTTCCCTCTGGATTCTGCCAGTGCTTCTGTCCACTCTGTATCATCCGGAGGATCAGATAGTATGCATGGTCACATGAAGACAACGGGTATGGACGCTTTTAGAGTTAGTCTATCAAGTGCTGTCAGCTCATCCAGCCATGGTTCTGGTCATGATGATGGCGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTCGTTGGTGGTGGTAATCATCGAGTTGGGAGCGGCTTGGGTGTAAAAATCGATTCTCTATTTCCCAAAGCCTTAGAATCTGCTGTAGTTCTTGATGTTCAGAATATTGCTTGCGGTGGACGACATGCAGCCTTAGTGACCAAACAAGGTGAAATTTTTTCCTGGGGAGAGGAATCAGGAGGCAGGCTTGGGCATGGTGTAGACTCTGATGTTCTCCATCCAAAGCTTATAGACACTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCAGGTGATCTTTACACTTGGGGTAATGGTGCATACAATTATGGTCTTCTGGGGCATGGAAATCAAGTGAGCCACTGGGTACCAAAAAGAGTAAATGGCCCCTTGGAAGGCATACATGTTTCATATATTTCATGTGGACCATGGCATACTGCTGTTGTAACATCTGCTGGGCAATTATTCACTTTTGGTGACGGCACATTTGGTGCTTTGGGTCATGGAGACCGAGAAAGTGTTTCATTACCAAGGGAAGTTGAGTCCCTCAAAGGTCTTCGAACTATGCGGGCTTCTTGTGGTGTTTGGCATACTGCTGCTGTTGTGGAAGTTATGGTTGGAAATTCAAGTTCCAGCAACTGCTCGTCAGGGAAGCTGTTTACTTGGGGGGATGGAGACAAAGGTCGACTTGGGCACGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCCCTTGTTGAACATAACTTTTGTCAAGTTGCTTGTGGACACAGTCTCACTGTTGCACTTACCACCGCAGGCCATGTCTATGCAATGGGAAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGCGGATGGGAAGCTACCAATCCGTGTGGAAGGAAAACTGTTGAAGAGTTTTGTGGAGGAGATATCTTGTGGTGCATATCATGTTGCAGTTCTAACTTTAAGGAATGAAGTTTACACTTGGGGAAAAGGTGCAAATGGACGTTTAGGCCACGGGGATACAGATGATAGAAACAATCCAACACTAGTAGATGCTCTGAAAGACAAACATGTAAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATCTGCCTGCATAAGTGGGTATCTGGTGTTGACCAGTCAATGTGTTCAGGCTGTCGTCTGCCATTTAATTTCAAAAGGAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAAGCTTCAATGGCTCCAAACCCCAACAAACCTTATCGTGTATGTGATGGTTGTTTTAATAAACTTAGGAAAACTTTAGAATCTGATTCTTCATCTCATTCTTCCATTAGCAGAAGAGGAAGTATTAATCAGGGGTCTATTGAGTTGCTTGACAAGGATGATAAATTGGATACTAGATCTCGTAATCAACTTGCCAGGTTTTCTTCGACGGAATCCTTGAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAGTTCAACAGTAGCCGTGTCTCTCCTGTTCCAAATGGGGGTTCACAATGGGGAGCACTCAATATTTCTAAATCTTTTAATCCCGTTTTTGGATCGTCAAAGAAATTTTTCTCGGCTTCTGTTCCAGGATCTAGAATCGTTTCCAGGGCAACATCCCCAATATCTAGACGGCCTAGCCCACCTCGGTCAACTACTCCAACTCCGACACTGGGAGGTCTTACAACCCCAAAGATAGTCGTGGATGATGCTAAGAAGACTAATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAGCCTGACTCGGAAATCCCAACTTCAAGAAATCGAGTTGGAAAGAACTTCTAAACAGCTAAAAGATGCAATAGCAATTGCCGGGGAAGAAACAGCCAAATGTAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCCATTGGAGCAGCTAAGAGTGTCAAATCACCTTCTATTGCTTCTTTAGGCTCCAATGAACTTAGCTTTGCTTCCATTGATCGATTAAATATTCAAGCAACAAGCCCAGAAGCAGATTTAACTGGTTCAAATAACCAGTTACTTTCAAATGGATCAAGCACTGCCAGTAATCGCAGCACAGGTCAGAATAAACAGAACCAGCCAGATTCAACTAATAAAAATGGGAGCCGAACAAAGGATAGTGAATCCCGTAGTGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACACTCACCTCCCTACCCGGAGGTGTAATAGATCTCAAGAGAGTTCGCTTCAGTCGGAAGCGGTTCAGTGAAAAACAAGCAGAAAACTGGTGGGCCGAGAATCGCGCAAGAGTATATGAACAGTACAATGTACGCATGATTGACAAGTCCAGTGTTGGTGTTGGCAGTGAGGACCTGGCTCATTGA 3306 0.4368 MEGFGMTSDLSRTGAAERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLHSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKSFFPLDSASASVHSVSSGGSDSMHGHMKTTGMDAFRVSLSSAVSSSSHGSGHDDGDALGDVFIWGEGTGDGVVGGGNHRVGSGLGVKIDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIDTLSNTNIELVACGEYHTCAVTLSGDLYTWGNGAYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRESVSLPREVESLKGLRTMRASCGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVALVEHNFCQVACGHSLTVALTTAGHVYAMGSPVYGQLGNPQADGKLPIRVEGKLLKSFVEEISCGAYHVAVLTLRNEVYTWGKGANGRLGHGDTDDRNNPTLVDALKDKHVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDGCFNKLRKTLESDSSSHSSISRRGSINQGSIELLDKDDKLDTRSRNQLARFSSTESLKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTTPKIVVDDAKKTNDSLSQEVIKLRSQVESLTRKSQLQEIELERTSKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPIGAAKSVKSPSIASLGSNELSFASIDRLNIQATSPEADLTGSNNQLLSNGSSTASNRSTGQNKQNQPDSTNKNGSRTKDSESRSETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAENWWAENRARVYEQYNVRMIDKSSVGVGSEDLAH 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02983 1101 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 314 324 IPR000408 -
Vifa1g02983 1101 Pfam Unstructured region between BRX_N and BRX domain 956 1021 - -
Vifa1g02983 1101 Gene3D - 215 494 IPR009091 -
Vifa1g02983 1101 Gene3D - 495 665 IPR009091 -
Vifa1g02983 1101 FunFam PH, RCC1 and FYVE domains-containing protein 1 237 488 - -
Vifa1g02983 1101 Pfam Transcription factor BRX N-terminal domain 915 947 IPR027988 -
Vifa1g02983 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 327 IPR000408 -
Vifa1g02983 1101 Pfam FYVE zinc finger 654 720 IPR000306 GO:0046872
Vifa1g02983 1101 MobiDBLite consensus disorder prediction 978 1032 - -
Vifa1g02983 1101 MobiDBLite consensus disorder prediction 1016 1032 - -
Vifa1g02983 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 602 653 IPR000408 -
Vifa1g02983 1101 MobiDBLite consensus disorder prediction 978 1015 - -
Vifa1g02983 1101 SUPERFAMILY RCC1/BLIP-II 266 655 IPR009091 -
Vifa1g02983 1101 Pfam Pleckstrin homology domain 21 127 IPR001849 -
Vifa1g02983 1101 MobiDBLite consensus disorder prediction 832 859 - -
Vifa1g02983 1101 MobiDBLite consensus disorder prediction 136 190 - -
Vifa1g02983 1101 FunFam PH, RCC1 and FYVE domains-containing protein 1 489 659 - -
Vifa1g02983 1101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 727 IPR013083 -
Vifa1g02983 1101 Coils Coil 864 905 - -
Vifa1g02983 1101 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 658 720 IPR017455 -
Vifa1g02983 1101 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 421 431 IPR000408 -
Vifa1g02983 1101 ProSiteProfiles BRX domain profile. 1028 1083 IPR013591 -
Vifa1g02983 1101 MobiDBLite consensus disorder prediction 759 801 - -
Vifa1g02983 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 549 IPR000408 -
Vifa1g02983 1101 Gene3D - 19 136 IPR011993 -
Vifa1g02983 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 379 IPR000408 -
Vifa1g02983 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 601 IPR000408 -
Vifa1g02983 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Vifa1g02983 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 434 IPR000408 -
Vifa1g02983 1101 MobiDBLite consensus disorder prediction 142 172 - -
Vifa1g02983 1101 Pfam Transcription factor regulating root and shoot growth via Pin3 1027 1082 IPR013591 -
Vifa1g02983 1101 MobiDBLite consensus disorder prediction 787 801 - -
Vifa1g02983 1101 SUPERFAMILY PH domain-like 19 127 - -
Vifa1g02983 1101 Coils Coil 920 940 - -
Vifa1g02983 1101 FunFam Putative E3 ubiquitin-protein ligase HERC1 660 728 - -
Vifa1g02983 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 550 598 IPR000408 -
Vifa1g02983 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 603 650 IPR000408 -
Vifa1g02983 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 498 546 IPR000408 -
Vifa1g02983 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 435 483 IPR000408 -
Vifa1g02983 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 379 431 IPR000408 -
Vifa1g02983 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 328 376 IPR000408 -
Vifa1g02983 1101 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 63 939 - -
Vifa1g02983 1101 PRINTS Chromosome condensation regulator RCC1 signature 311 324 IPR000408 -
Vifa1g02983 1101 PRINTS Chromosome condensation regulator RCC1 signature 437 451 IPR000408 -
Vifa1g02983 1101 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Vifa1g02983 1101 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Vifa1g02983 1101 PRINTS Chromosome condensation regulator RCC1 signature 421 437 IPR000408 -
Vifa1g02983 1101 PRINTS Chromosome condensation regulator RCC1 signature 597 618 IPR000408 -
Vifa1g02983 1101 PRINTS Chromosome condensation regulator RCC1 signature 539 557 IPR000408 -
Vifa1g02983 1101 SMART fyve_4 652 721 IPR000306 GO:0046872
Vifa1g02983 1101 SUPERFAMILY FYVE/PHD zinc finger 654 725 IPR011011 -
Vifa1g02983 1101 CDD PH_PLC_plant-like 18 128 - -
Vifa1g02983 1101 CDD FYVE_like_SF 663 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02983 Vifa-Chr1 467238555 467246981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02983 924 1092 Major Intrinsic Protein MIP AT1G31880 33.333 1.14e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02983 - - gmx:100802464 1929.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02983 1 467238555 467246981 Vifa1g02983 1 467238555 467246981 ECH