Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02982 ATGGAAGAAACGAGTGAGTTGCAACCGGAAGAAAATAAGGTCTCTATGGAGAAAAGTACGAAAAGAAAGCTCAAAACGCCTGCGCAGCTTAAGGGTTTGGAGAATTTTTATACTGAGCACAAATATCCGACGGAGGAGTTGAAATTAGTGATTGCTGAGGAGTTAGGGTTGACGGAAAAACAAGTCTCTGGATGGTTTTGCCATCGAAGGTTAAAAGATAAGAGATTGTCGAAAGATGAATCGACTGCTAACGGTCGACAAGATCGTTCAAGCGGTGTCATCCAGGATCGTGGAAGTGGACTTGGGCAAGGGCAGGATTCATGCGGAAGTAGTAAACATGGTGATTATAGGAATCATTTTTCTGAAAATGTTAGTGGAATGGACGATACGTCGTCTGAGAGTAGCTCTTATTTGCAAGAACGGTTGTATCCTCAAGGCCAGGGTCCGTATGAGATGGAGCCTTCTAGATATCTAGCATCTGGTAAATCACTTCCACCCTTAAAACCAAAGGGTGCAATGAACATGGGATATAAACCGTCAGGGTATTTGAAAGTGAAGGGTGAGATAGAGCATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGAATTATCTGGAAGATGGTCCACTACTTGGTGTGGAATTTGATCCACTTCCTCCAGGGGCCTTTGAATGCCAAACCCAAGATCCAGTTCCCGAACCATACTGTTTTGCTGATCCTGCTCTTCTGAAATCTCCAGAAATCTCCACAGCAAAAAGGCGACCTGGTCTTAGCTCAAGATATGATTCATATTATACTAAACATAGTTCTCAAGATACTCATATGGAAGAAGATGATGACGACTTTGGTTCCTTGCGTGATGCGGTTGTTCATGATAAACAAGATAAGGAACCTCTCCATGGTACAAAACACCGACAAGCTTTTCAGAGTAATGCCACTCGTGTTCCTGCCAGGAACTCTTCCTTGGATTTGTATGAAGACTCTACCGGGGAAGCTGCTTATAATATCACTAAGAATCATAGGAAAGACACCAAGCGCGGTGTCGAGGATTTTCTGCCATACGAATATGAAAACACCAATCCAAAGAATGCGCAAAGGAGTGTTCATGCAGAGTTTTTGCAATATGATTATGATAGCGTCAACCCCAAGAACGCGCAAAGGAGTGAACATGTGAAAACAAAACCTTCAAACTCAATCCGTAATTCTCGTGGATCTGCAGATACTGAAGAAAGAGAGCTATCTACTAGAATGACTAAGGAAGAGATGTTCAAGGCGGAAAGGAAGGCAAAAAAGCAATTTCGCGATACGGGTGGAGCAGCGATGCTTTCAAATGAAACTATGGTTGCAAAACGACTTAAACCAAATACGTTTCTACCATACAACGCGAATCAATTTTCCGCTTCCGAAATAGAACCAAGGAAAATTCAGAGGTCTGGTGCAGAGATGCCGTCTAGCTTTAGCGAGGATGAAACCGGCGATACAAGTTCCTCGCTGAATTGA 1503 0.4298 MEETSELQPEENKVSMEKSTKRKLKTPAQLKGLENFYTEHKYPTEELKLVIAEELGLTEKQVSGWFCHRRLKDKRLSKDESTANGRQDRSSGVIQDRGSGLGQGQDSCGSSKHGDYRNHFSENVSGMDDTSSESSSYLQERLYPQGQGPYEMEPSRYLASGKSLPPLKPKGAMNMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYLEDGPLLGVEFDPLPPGAFECQTQDPVPEPYCFADPALLKSPEISTAKRRPGLSSRYDSYYTKHSSQDTHMEEDDDDFGSLRDAVVHDKQDKEPLHGTKHRQAFQSNATRVPARNSSLDLYEDSTGEAAYNITKNHRKDTKRGVEDFLPYEYENTNPKNAQRSVHAEFLQYDYDSVNPKNAQRSEHVKTKPSNSIRNSRGSADTEERELSTRMTKEEMFKAERKAKKQFRDTGGAAMLSNETMVAKRLKPNTFLPYNANQFSASEIEPRKIQRSGAEMPSSFSEDETGDTSSSLN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02982 500 CDD homeodomain 21 75 IPR001356 GO:0003677
Vifa1g02982 500 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Vifa1g02982 500 MobiDBLite consensus disorder prediction 405 435 - -
Vifa1g02982 500 MobiDBLite consensus disorder prediction 76 172 - -
Vifa1g02982 500 MobiDBLite consensus disorder prediction 380 438 - -
Vifa1g02982 500 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 117 499 - -
Vifa1g02982 500 MobiDBLite consensus disorder prediction 294 321 - -
Vifa1g02982 500 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g02982 500 MobiDBLite consensus disorder prediction 7 26 - -
Vifa1g02982 500 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Vifa1g02982 500 SMART HOX_1 18 80 IPR001356 GO:0003677
Vifa1g02982 500 MobiDBLite consensus disorder prediction 305 321 - -
Vifa1g02982 500 MobiDBLite consensus disorder prediction 268 282 - -
Vifa1g02982 500 MobiDBLite consensus disorder prediction 123 142 - -
Vifa1g02982 500 MobiDBLite consensus disorder prediction 468 500 - -
Vifa1g02982 500 MobiDBLite consensus disorder prediction 481 500 - -
Vifa1g02982 500 MobiDBLite consensus disorder prediction 248 282 - -
Vifa1g02982 500 Gene3D - 10 92 - -
Vifa1g02982 500 MobiDBLite consensus disorder prediction 86 111 - -
Vifa1g02982 500 SUPERFAMILY Homeodomain-like 16 81 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02982 Vifa-Chr1 466534659 466538121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02982 3 500 Homeobox Transcription Factor Family AT4G03250 40.462 2.64e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa1g02982 Homeodomain 5.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02982 - - gmx:100803515 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02982 1 466534659 466538121 Vifa1g02982 1 466534659 466538121 ECH