Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02973 ATGGAGGATAATTCTGAGAGTTCTAGGGCTTTGAATCGTTCAGGAGTTTCAGATAGGAATCAGAGGCAAAACCGTTTTTCCGGCGAGGGATCAGAGGATTCTAGGTTTAGAAAGGAAAGAGATTGGATTCATGGTGGACTACAAGTTGATCTAAACAAAAGCCTAGGAGGGTTTTGTGAGGATGAAGTTGAGAATGACCGTTTCTTTTCTTCGGTGGAATGGGATGATATTAGCTTGAGGCAGTGGTTGGATAAGCCCGATAGGTCGGTTGATTTCTTCGAGTGCTTGCATGTGTTTAGACAAATAGTGGAAATCGTTAACGCGGCTCATTGTCAAGGTGTTGTTGTTCATAATGTGAGGCCTTCGTGCTTTGTCATGTCGTCTTTCAACCATATCTCGTTTATTGAATCGGCTTCTTGTTCGGATACTGGTTCAGATTCTTTAGGAGATGGAGTGAATGGCGAACAAGGTGGTGAGGCTAAAACTCCGACATCTATTATGCATCCGCAGAGTTTAGGAGGTGAAGATTTTTTGCCTGCCAAGAATTCGATGGCTGCTCGGTCTGATTCTAGTTGCATGCTGTCAAGTGCTGTGTACGCAGCTCGTGCGTCGTTGATAGAAGAAACAGACGAGAATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTGGAAGTAAAGAAGCAATCGTTTCCGATGAAACAAATACTACAAATGGAGATGACTTGGTACACTAGTCCCGAAGAGGTTGCCGGTACTCCTAGTTCATGTGCTTCCGATGTTTACAGATTGGGGATTCTTCTATTTGAGCTATTCTGCCCGTTGAGCTCGAGAGAAGAGAAAAGTAGAACAATGTCTAGTCTTAGACATAGAGTTCTTCCTCCGCAGTTACTTCTAAAATGGCCTAAGGAAGCTTCGTTTTGCTTATGGTTACTACATCCCGACCCTAGCAGTCGCCCAACACTAGGTGAGTTGTTGCAGAGTGATTTTCTTAATGAACAGCGTGACGATATGGAAGAACGCGAAGCGGCAATAGAGATTAGACAAAAGATAGAAGATCAGGAGTTGTTACACGAATTCCTTTCGTTACTTAAACAAAGAAAACAGGAAGTTGCTGAAAAATTGCAACACACTATCGCTTTTCTGTGTTCAGATATCGAAGAAGTGGCCAAGAAGCAAACTAGGTTTAAAGAGATTTCCGGTGTTGAACTAGGGAGCGATGATCGTTCAGCATCAACTTTTCCATCCATGACCGTTATCGATAGCGGAGATTCTGCATGTTTAGGAACTAGAAAACGAGTCAGACTAGGGGTGTATGTTGATGAAAGTGGCGATAACACGGGGAATGATCAGAAAAGTTCGGGAAGTTTTCTTTCAAAAAGTTCACGACTAATGAAAAACTTCAAGAAACTCGAGTCGGCATATTTCTTAACACGATGCAAACCAACCTATTCCTCGGGGAGACAGGCGGTTAGACTTTCATCTATAGCAAATGATGGGAGAGGGTCTGTTGTCATAAATGAACGAAGTAGCATCAATAGCCTGGCGTTGAAAGAGAAAGGAAGAGACGGCGGCGCAAGTGGCTGGATAAACCCTTTCCTCGAGGGTTTGTGCAAGTACTTATCTTTCAGTAAGGTCAAGGTAAAAGCTGACCTGAAGCAAGGAGATCTTTTGCATTCGTCCAACTTAGTATGCTCGCTCAGTTTTGATCGCGATGGAGAATTTTTCGCAACCGCCGGTGTGAATAAAAAAATCAAAATATTTGAATGTGATACAATCGTAAATGAGGACCGCGATATCCACTATCCGGTAGTAGAGATGGCTTGCAGGTCAAAGTTGAGCAGTTTATGTTGGAATACATACATCAAAAGTCAAATTGCTTCTAGTAACTTTGAAGGTGTTGTACAGTTATGGGACGTTACGAGAAGTCAAGTACTATCTGAAATGAGGGAGCACGAGCGGCGAGTGTGGTCGATTGATTTCTCATCAGCAGATCCAACAATGTTGGCAAGTGGAAGCGACGACGGTTGCGTTAAGCTATGGAGTATCAATCAGGGAGTTAGTATTGGCACCATCAAAACAAAGGCAAACGTATGCTGTGTTCAGTTTCCTCTCGATTCTGCTCGTTACCTTGCATCCGGTTCCGCGGATCACCGGATATATTACTATGACCTACGCAACTTAAGAGTGCCGCTTTGTACTTTAGTCGGACATAATAAGACAGTGAGCTACATCAAGTTTGTAGACAATGTCAACCTTGTCTCCGCGTCCACAGACAACACTTTGAAGCTTTGGGATTTGTCTTCGTGTACATCTCGAGTTATAGACTCGCCGATTCAATCGTTCACTGGTCACACAAATGTTAAGAACTTCGTGGGATTATCGGTCTCGGATGGTTATATTGCTACTGGTTCAGAGACAAATGAGGTGTTTATATACCACAAGGCCTTCCCTATGCCAGCATTGCAATTCAAGTTTCAGAACACCGATCCAATTTCCGGCCACGAAGTGGACGATGCGGCACAGTTTGTCTCGTCGGTTTGTTGGCGAGGTCAGTCGCCAACGTTAATCGCGGCAAACTCGACAGGGAATGTTAAGATTCTGGAGATGGTTTGA 2613 0.4363 MEDNSESSRALNRSGVSDRNQRQNRFSGEGSEDSRFRKERDWIHGGLQVDLNKSLGGFCEDEVENDRFFSSVEWDDISLRQWLDKPDRSVDFFECLHVFRQIVEIVNAAHCQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGDGVNGEQGGEAKTPTSIMHPQSLGGEDFLPAKNSMAARSDSSCMLSSAVYAARASLIEETDENKMKDRRKDEEVEVKKQSFPMKQILQMEMTWYTSPEEVAGTPSSCASDVYRLGILLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSDFLNEQRDDMEEREAAIEIRQKIEDQELLHEFLSLLKQRKQEVAEKLQHTIAFLCSDIEEVAKKQTRFKEISGVELGSDDRSASTFPSMTVIDSGDSACLGTRKRVRLGVYVDESGDNTGNDQKSSGSFLSKSSRLMKNFKKLESAYFLTRCKPTYSSGRQAVRLSSIANDGRGSVVINERSSINSLALKEKGRDGGASGWINPFLEGLCKYLSFSKVKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKIFECDTIVNEDRDIHYPVVEMACRSKLSSLCWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGCVKLWSINQGVSIGTIKTKANVCCVQFPLDSARYLASGSADHRIYYYDLRNLRVPLCTLVGHNKTVSYIKFVDNVNLVSASTDNTLKLWDLSSCTSRVIDSPIQSFTGHTNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALQFKFQNTDPISGHEVDDAAQFVSSVCWRGQSPTLIAANSTGNVKILEMV 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02973 870 CDD WD40 563 866 - -
Vifa1g02973 870 SMART WD40_4 553 588 IPR001680 GO:0005515
Vifa1g02973 870 SMART WD40_4 684 723 IPR001680 GO:0005515
Vifa1g02973 870 SMART WD40_4 727 765 IPR001680 GO:0005515
Vifa1g02973 870 SMART WD40_4 774 813 IPR001680 GO:0005515
Vifa1g02973 870 SMART WD40_4 602 638 IPR001680 GO:0005515
Vifa1g02973 870 SMART WD40_4 824 868 IPR001680 GO:0005515
Vifa1g02973 870 SMART WD40_4 641 681 IPR001680 GO:0005515
Vifa1g02973 870 SMART serkin_6 5 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02973 870 MobiDBLite consensus disorder prediction 1 34 - -
Vifa1g02973 870 ProSiteProfiles Trp-Asp (WD) repeats profile. 648 690 IPR001680 GO:0005515
Vifa1g02973 870 MobiDBLite consensus disorder prediction 145 166 - -
Vifa1g02973 870 ProSiteProfiles Protein kinase domain profile. 1 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02973 870 ProSiteProfiles Trp-Asp (WD) repeats profile. 734 768 IPR001680 GO:0005515
Vifa1g02973 870 Pfam WD domain, G-beta repeat 730 765 IPR001680 GO:0005515
Vifa1g02973 870 Pfam WD domain, G-beta repeat 644 681 IPR001680 GO:0005515
Vifa1g02973 870 Pfam WD domain, G-beta repeat 558 587 IPR001680 GO:0005515
Vifa1g02973 870 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 648 685 - -
Vifa1g02973 870 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 531 870 - -
Vifa1g02973 870 SUPERFAMILY Protein kinase-like (PK-like) 64 345 IPR011009 -
Vifa1g02973 870 SUPERFAMILY WD40 repeat-like 558 867 IPR036322 GO:0005515
Vifa1g02973 870 ProSitePatterns Trp-Asp (WD) repeats signature. 752 766 IPR019775 -
Vifa1g02973 870 Gene3D - 534 870 IPR015943 GO:0005515
Vifa1g02973 870 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 734 768 - -
Vifa1g02973 870 MobiDBLite consensus disorder prediction 8 24 - -
Vifa1g02973 870 Gene3D Transferase(Phosphotransferase) domain 1 75 343 - -
Vifa1g02973 870 PANTHER PROTEIN SPA1-RELATED 2 33 870 IPR044630 GO:0009640
Vifa1g02973 870 PRINTS G protein beta WD-40 repeat signature 752 766 IPR020472 -
Vifa1g02973 870 PRINTS G protein beta WD-40 repeat signature 625 639 IPR020472 -
Vifa1g02973 870 PRINTS G protein beta WD-40 repeat signature 668 682 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02973 Vifa-Chr1 463897621 463901198 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02973 638 812 Miscellaneous Gene Families AT5G08390 25.698 1.02e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Vifa1g02973 WD40 0.00025 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02973 K26557 - gmx:100811457 1449.88