LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g02971	ATGGGTTGCATGTGTTGCAAGCCTTCTGCAATTGAGGATAGTAATGAGAGTCCGAGGGAGCGTTTGTCGAACAAAGCTGTTGTTGATTCGCGTGTGTCTAGTAGAGGGACTTCGTCGAGGAGGGAGGAAGTGTATAGGGTGAAGGATAGAGGTGATAGTAACAATGATGCAAGGACGGCGTTGATTGATAAGCAAGGACAAGGGAATGGGTCGGTTAGAGTTCATGGTGATAATTTTGAGAGGAAGAGGGAGAAGATGGAGTATGTTGTTGCTCAACATCCAGGGATTGGTACTGTTCCGAAAGCCTTGGAAGGGGAACATGTTGCGGCTGGATGGCCGTCATGGCTGGCGGCTGTTGCGGGTGAAGCAATCAAGGGATGGCTGCCACGACGTGCAGATTCTTTTGAGAAATTGGATAAAATTGGTCAGGGAACTTATAGTAATGTTTATAGAGCCCGTGATCTTGAACAAAGAAAGATCGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAACCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATTAAACTGGAAGGCTTGGTTACGTCAAGGATGTCGTGCAGTTTATACCTTGTGTTCGAGTACATGGAGCATGACTTGGCTGGGCTTGCATCACATCCTGGACTCAAGTTTACAGAATCACAGGTTAAATGTTACATGCAGCAACTTTTACGTGGTCTTGATCACTGCCACAGTCGTGGTGTGCTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACAATGGAGTATTGAAAATTGCAGACTTTGGTTTGGCGAGCTTTTTTGATCCCAATCTAAATCAGCCACTCACAAGCCGAGTTGTCACGCTTTGGTATAGGCCACCTGAGCTTTTACTTGGAGCTACTTACTATGCCACTGCTGTAGATTTATGGAGTACAGGTTGCATACTTGCCGAGCTGTATGCTGGCAAGCCTATAATGCCTGGTAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCGCCTTCCGAGGACTATTGGAGAAAATCAAAATTGCCTCATGCAACGATATTTAAGCCTCAACAACCCTATAGGCGTTGTGTTGCTGAAACATTCAAGGACTTTCCTGCACCTGCAATAGAACTGATAGAGACACTCTTGTCCATAGACCCTGCTGATCGTGGAACTTCAGCATCTGCTTTGATGAGTGAGTTCTTCTCAATAAAGCCTCTACCATGTGATCCTTCAAGCTTGCCCAAGTACCCTCCTAGCAAAGAATTTGATGCCAAAGTACGGGACGAAGAAGCTAGACGACAAGGGGCAACGGGAAGCAAAGGCCAGAGACATGATCCCGAGAGAAGAGGAGTAAGAGAATCTCGAGCTGTACCCGCACCTGATGCCAATGCTGAACTAGTTGTGTCAATGCAGAAGAGACAAGGTCAGAACTATTCTCAAAGTAGGAGTGAGAAGTTTAACCCTCATCCCGAAGAAGCTGGTTCTGGATTTCCTATTGAACCCCCTAGACCATCACAAGTTGCAGAAGCAAGTGTTGATCCCCAAGCAAATCAACATAAAAGAGCCTCCCATTCAGGTCCACTTACTCACCGTGCTGCTTGGGCGAAAGCTGGGAAGAACCAGGACGATGCTCCAAAGATTTCTGTGGGCGGCGACTTATCTACAATCTCAGGCTTAGTTGCAGCTAGGAGGAGCATGCTGTCTGACGATCGCAGAGAAAGTTCCGGATCATCACAAGTGGAGGCTCCAAAACTAATTACCAGGTTTCCAGGATCCTTCAAAGAGGCCTCTGAATCATTGATGCAACAAAATCAAAATCAGAAGCATCATGTACATGCTTCTCAAAAGGAAGAAGTGAAAGGCAACAACAAAGACCCAAATGTTGCTGGTTATGGTTCAAAAGGTTATAAAATTCATTATTCTGGTCCACTGCTTGTTCCATCAAGCAACATGGACCAGATGCTGAAAGACCACGACCGCCAAATTCAAGAAGCGGTCAGAAGAGCACGTCTAGACAAGGCAAAAATGCGAAGACTCCAAGCTGAAGGGAACCAGATAAGCAATTCATTATTTGTTTCCGGCCGTTGA	2142	0.4542	MGCMCCKPSAIEDSNESPRERLSNKAVVDSRVSSRGTSSRREEVYRVKDRGDSNNDARTALIDKQGQGNGSVRVHGDNFERKREKMEYVVAQHPGIGTVPKALEGEHVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTESQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPNLNQPLTSRVVTLWYRPPELLLGATYYATAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPAPAIELIETLLSIDPADRGTSASALMSEFFSIKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGATGSKGQRHDPERRGVRESRAVPAPDANAELVVSMQKRQGQNYSQSRSEKFNPHPEEAGSGFPIEPPRPSQVAEASVDPQANQHKRASHSGPLTHRAAWAKAGKNQDDAPKISVGGDLSTISGLVAARRSMLSDDRRESSGSSQVEAPKLITRFPGSFKEASESLMQQNQNQKHHVHASQKEEVKGNNKDPNVAGYGSKGYKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQISNSLFVSGR	713

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g02971	713	FunFam	probable serine/threonine-protein kinase At1g54610	218	459	-	-
	Vifa1g02971	713	ProSiteProfiles	Protein kinase domain profile.	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g02971	713	Gene3D	Phosphorylase Kinase; domain 1	122	217	-	-
	Vifa1g02971	713	MobiDBLite	consensus disorder prediction	429	547	-	-
	Vifa1g02971	713	Coils	Coil	680	700	-	-
	Vifa1g02971	713	Pfam	Protein kinase domain	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g02971	713	SUPERFAMILY	Protein kinase-like (PK-like)	129	421	IPR011009	-
	Vifa1g02971	713	CDD	STKc_CDK9_like	135	419	-	-
	Vifa1g02971	713	MobiDBLite	consensus disorder prediction	614	645	-	-
	Vifa1g02971	713	ProSitePatterns	Protein kinases ATP-binding region signature.	141	164	IPR017441	GO:0005524
	Vifa1g02971	713	SMART	serkin_6	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g02971	713	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	255	267	IPR008271	GO:0004672\|GO:0006468
	Vifa1g02971	713	PANTHER	CELL DIVISION PROTEIN KINASE	133	425	-	-
	Vifa1g02971	713	MobiDBLite	consensus disorder prediction	487	502	-	-
	Vifa1g02971	713	FunFam	probable serine/threonine-protein kinase At1g54610	122	217	-	-
	Vifa1g02971	713	Gene3D	Transferase(Phosphotransferase) domain 1	218	458	-	-
	Vifa1g02971	713	MobiDBLite	consensus disorder prediction	438	473	-	-
	Vifa1g02971	713	MobiDBLite	consensus disorder prediction	10	42	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g02971	Vifa-Chr1	463192962	463197525	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g02971	127	451	Core Cell Cycle Gene Families	AT5G10270	53.372	4.28e-117	359

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vifa1g02971		Pkinase	2.9e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g02971	-		-	gmx:100792173	1261.13