Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02959 ATGAGTGACAATAGACCTGCACCATCTTCTCTGTCTCAAAATGTTGCTAAGAAAAAGAGGGGTAGACCCCAGGGTTCAAAAAATAGACCCAAACCAACTTCCATTATTAAGGAAGAATCTAACATTTTGGAACCAATTCTTATTGAGATCCCTCAAGGAAGAGATGTTGTGGAGTCTCTCATTAACTTAGCAAGGTCTCATCAAGCTGGAATCAGTGTAATGTCTGGTTCTGGTTTTGTCTATGATGTTACCATTATCAACCCAATAACTCGAGCCCCGAATTTTCCCATAGGAGGACCGATCTATATGAAATCTCTCATGGGAACTTACATAAATCCTAATATTGGTCAGGCTTCTCCCTCGATCTTGAGCACTACAACAATAAATCCCTTTTTCTCCATTACTCTCTCTAGTGGTGATAAAGAACATTTGTTTGGTGGAGTTGTTGGAGGGAAGCTAATGACTGCTGGAAAAGTTTTGATTACTGCAGCTTTTGTTAAGAAATCTAAAGTTCATAGGCCGCACATAAATAATGGAAAATTTCACCGTATTAAGTTGCCTCTAATCAAGATTGATAATTTTGAATGA 588 0.3827 MSDNRPAPSSLSQNVAKKKRGRPQGSKNRPKPTSIIKEESNILEPILIEIPQGRDVVESLINLARSHQAGISVMSGSGFVYDVTIINPITRAPNFPIGGPIYMKSLMGTYINPNIGQASPSILSTTTINPFFSITLSSGDKEHLFGGVVGGKLMTAGKVLITAAFVKKSKVHRPHINNGKFHRIKLPLIKIDNFE 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02959 195 Gene3D - 36 179 - -
Vifa1g02959 195 ProSiteProfiles PPC domain profile profile. 40 192 IPR005175 -
Vifa1g02959 195 SUPERFAMILY AF0104/ALDC/Ptd012-like 41 178 - -
Vifa1g02959 195 MobiDBLite consensus disorder prediction 1 36 - -
Vifa1g02959 195 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 13 177 IPR014476 GO:0003680
Vifa1g02959 195 CDD DUF296 45 162 IPR005175 -
Vifa1g02959 195 MobiDBLite consensus disorder prediction 1 19 - -
Vifa1g02959 195 Pfam Plants and Prokaryotes Conserved (PCC) domain 45 164 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02959 Vifa-Chr1 460308858 460309445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02959 14 173 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.515 4.24e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02959 - - cam:101509190 160.229