Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02956 ATGTTTCTGATATCGTGTTCATTTTTGTTTGTTAGGTTGAAGCGCAAGGGCGCTGGTGTTGGAACTAAGCAATCTAAGAGAGCTTTGAAGGATCCTAATAAGCCTAATAAACCTTTGAGTTCTCTCCATTTGAGTTTATTTGTTTTTTGTTTTTCCGATCTAATGTTTCCGATCTCGTGTTCATTTTTGTTTGTTAGGTTGAAGTGCAAGGGCACTGGTGTTGGAACTAAGAAATCGAAGAGAGTCACAAAGGATCCTAACAAGCCTAAGAAACCTCTAAGTGCTTTCTTCATTTTCATGTCTGAACTCAGAGATACTTTCAAGAAGGAGAATCCCAACAACAAGCATGTCGCTGTGGCTGGTAAGGCTGGAGAAAAAGAGTGGAAAGCATTGTCTCATGCTATCGAAGAGAAGGCTCCTTATGTTGCTACTGCAGAGAAGAAGAAGGAGTATGAGAAAGCTATACGTGCCTATAACATGCTGAAGGAAAAGTTGCATCTGAGGAAGAGGGATCTGACAAGTCCAAGTTGA 531 0.4068 MFLISCSFLFVRLKRKGAGVGTKQSKRALKDPNKPNKPLSSLHLSLFVFCFSDLMFPISCSFLFVRLKCKGTGVGTKKSKRVTKDPNKPKKPLSAFFIFMSELRDTFKKENPNNKHVAVAGKAGEKEWKALSHAIEEKAPYVATAEKKKEYEKAIRAYNMLKEKLHLRKRDLTSPS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02956 176 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 67 164 IPR031061 -
Vifa1g02956 176 Pfam HMG (high mobility group) box 89 159 IPR009071 -
Vifa1g02956 176 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 89 159 IPR009071 -
Vifa1g02956 176 SUPERFAMILY HMG-box 76 158 IPR036910 -
Vifa1g02956 176 CDD HMG-box_AtHMGB1-like 90 149 - -
Vifa1g02956 176 SMART hmgende2 88 160 IPR009071 -
Vifa1g02956 176 Gene3D High mobility group box domain 73 169 IPR036910 -
Vifa1g02956 176 Coils Coil 144 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02956 Vifa-Chr1 459931416 459938123 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa1g02956 HMG_box 3.3e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02956 K25507 - gmx:100499992 125.561