Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02952 ATGTCTTCATCGGAACCCGATTACGATATCCCGCCGGCTCCAACATACAGGACCCCACCGGCACTAGTAGCTTTCACCCTCACCGTCCTCATCTTAGCCTTTGTGGCTTTCAGCATTGTGTATCTTTGTAAGTATTGTTTTCAAGGCCTTTTCCATAATTGGGCCTTACAGCGCACAACCTCGGGTTCTCTCGTTCGTCTTTCGCCCGAGAGATCACCACCGAGAGGACTCGACAATACCCTTCTAGACAAGTTCCCTACTTTTGTTTACTCTTCTGTGAAAGATCTTCGTGAGGAAAAGAGTTACAGCTTAGAATGTGCCATTTGTTTGCTAGAGTTTGAGGATGATAGCATGCTTCGTCATCTGACCATTTGTTGTCATGTCTTCCATCAAGAATGTATTGATTTATGGCTTGAATCTCATAAGACATGTCCCGTTTGTCGAACCGACCTCGATTTAAATCCCACGTTGAAACACGGGGACAATGACAACGACAACAACCACGACAACAACAACAATGACACCGTTGATATAGACGAAGGTATGGTGCAGTTACCATGCGAAGCTATACGTATTGATGTTAGAGAAGAGGAAAGAGACACTGTTGGTGAGATCACTGGAGCTCAAATAAATGCCACTAACCAACATAATTGCGAGAACACGAGCATGCCACGAGGAGAAGAACCTAGGTTTTCAAAGTCGCATTCAACGGGGCATTCTATAGTAATGATTAGAGGTGAAGAGAAAGATGATGCGAAATATACATTGAGATTGCCTGAGCATGTTATAAAGGGAGGGCACAGCAGCTCTAAGAGCTGTACAACTTACAATGAAATGATATTGACAGAGCCTACACCTTGTAGTAATTGTGGTTTTGTTAAACCAGTAGCTGGCTCCTCTTCACTTGCTCATCATACTCAAGACCATTGA 930 0.4387 MSSSEPDYDIPPAPTYRTPPALVAFTLTVLILAFVAFSIVYLCKYCFQGLFHNWALQRTTSGSLVRLSPERSPPRGLDNTLLDKFPTFVYSSVKDLREEKSYSLECAICLLEFEDDSMLRHLTICCHVFHQECIDLWLESHKTCPVCRTDLDLNPTLKHGDNDNDNNHDNNNNDTVDIDEGMVQLPCEAIRIDVREEERDTVGEITGAQINATNQHNCENTSMPRGEEPRFSKSHSTGHSIVMIRGEEKDDAKYTLRLPEHVIKGGHSSSKSCTTYNEMILTEPTPCSNCGFVKPVAGSSSLAHHTQDH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02952 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Vifa1g02952 309 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vifa1g02952 309 PANTHER RING FINGER DOMAIN-CONTAINING 15 156 - -
Vifa1g02952 309 MobiDBLite consensus disorder prediction 216 237 - -
Vifa1g02952 309 SMART ring_2 106 147 IPR001841 -
Vifa1g02952 309 SUPERFAMILY RING/U-box 81 154 - -
Vifa1g02952 309 Pfam Ring finger domain 105 148 IPR001841 -
Vifa1g02952 309 FunFam E3 ubiquitin-protein ligase ATL6 66 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02952 Vifa-Chr1 459657026 459657955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02952 20 272 Rapid Response to Elicitors AT2G35000 33.588 6.54e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02952 - - vum:124822565 312.768