Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02950 ATGGTAGATAATGTATTTTCACAAAAATCTCCCTCCTTTGACATGTGCATCAATCACCCTCATGAACTCTCAGAGGATCTAACCACACCATCCTCTAAAAGATCTAGGGGTAGACCTAAGGGCTCCAAAAACAAACCTAAACCACCTTCCATGATCACGGTAGAATCTGAAACCTTCATGAAACCGATTTTTATTGCAATCCCTGCTGGAGAAGATGTGGTCGAGTCGATAATAAAGACGGCTCGGTGTCATGAAGCTGATATATTAGTGTTGAGAGGTTCTGGTCTTGTCTCTGAGGTTACGCTTCTTAACTCGGCGTGCTTAAACTCTCCATTCACTATCAGAGGAAACTTGCAAATGACATCTCTTACTGGAACTTATTTTAATACGGATTCCGATCGTGTTCCTTCGGAGTTTGTCCTCGACCCTGCTTATTCTTCTTTCACCATTTTCCTATCTGGTAATCATGGTCAATTATTTGGTGGAGTTGTTAGAGGAAAGGTCAGGGCTTCAAGTGTTGTTTTGATTTCTGCCACTCTTTGTAAGAAGCCAAAGTTTTATAGGGTGGCCTCTAATAATGAAGATCGACGTGAAGATAAAAATGTTGATTCAAGACTTGGTGGTGCTGTCATCCATAATGTTGTTGTTCCACAACATAACAACAATAACAACGTTTCCAATGTGTCCAGTGCACATGCATTGACACAACTCCACTTTTACTAA 723 0.408 MVDNVFSQKSPSFDMCINHPHELSEDLTTPSSKRSRGRPKGSKNKPKPPSMITVESETFMKPIFIAIPAGEDVVESIIKTARCHEADILVLRGSGLVSEVTLLNSACLNSPFTIRGNLQMTSLTGTYFNTDSDRVPSEFVLDPAYSSFTIFLSGNHGQLFGGVVRGKVRASSVVLISATLCKKPKFYRVASNNEDRREDKNVDSRLGGAVIHNVVVPQHNNNNNVSNVSSAHALTQLHFY 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02950 240 ProSiteProfiles PPC domain profile profile. 57 205 IPR005175 -
Vifa1g02950 240 CDD DUF296 61 176 IPR005175 -
Vifa1g02950 240 Pfam Plants and Prokaryotes Conserved (PCC) domain 61 178 IPR005175 -
Vifa1g02950 240 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 205 IPR014476 GO:0003680
Vifa1g02950 240 MobiDBLite consensus disorder prediction 16 52 - -
Vifa1g02950 240 Gene3D - 60 202 - -
Vifa1g02950 240 SUPERFAMILY AF0104/ALDC/Ptd012-like 59 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02950 Vifa-Chr1 459490377 459491099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02950 33 196 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.928 4.40e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02950 - - psat:127121088 249.21