Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02945 ATGGCAGAGCTCTCAGAATTGTTTCCTTCAGACAAACAATTTGATGGTTTAGTGCACATGTATGTTCATGTCATAACATTTGATCCTCCAACGTTTGTTATGATATGTGTCTTAATCACAATGTTTTTCTTTATCTTCCATCAAATTTTCCATGGTTTATTCTATTGGTTTGTGGAATCTAGGCCTATACATATCAATGAACGTGACATTGAACAAGGAGATACTGATCTAATTCGTGAAGATAACGATCATGACCATGATGATGATGATCATGATCATGATCGCCAAAATGTTACAATATTTCATACTCTTGTTTTTAGCAATTTACAAGCTTGGACAATTTTGGCTGGAATCGAAGAAGAACAAGAACAAGAAGATAATTATTATGATGAGAAAAGAGGACAAAAACTTAGAGCGTGTAAGAAACTACCGCCTTTGATGAACTATGATGGAGTTGGAAAGCATGATCATGAGTTAAGAAGAAGTTGCGATGAATGTGCGATTTGTTTGGAAGATTTTCAAGTGGGGCAATTGTGTCAAGTTTTTCCGGTTTGTCGACACATTTTTCATGTCGAATGCATTGATCATTGGTTGCAGAGGAAATTCACGTGTCCGATATGTCGTAATTGTTTATAA 636 0.3538 MAELSELFPSDKQFDGLVHMYVHVITFDPPTFVMICVLITMFFFIFHQIFHGLFYWFVESRPIHINERDIEQGDTDLIREDNDHDHDDDDHDHDRQNVTIFHTLVFSNLQAWTILAGIEEEQEQEDNYYDEKRGQKLRACKKLPPLMNYDGVGKHDHELRRSCDECAICLEDFQVGQLCQVFPVCRHIFHVECIDHWLQRKFTCPICRNCL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02945 211 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 30 209 IPR044675 -
Vifa1g02945 211 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Vifa1g02945 211 SUPERFAMILY RING/U-box 165 210 - -
Vifa1g02945 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 211 IPR013083 -
Vifa1g02945 211 Pfam Ring finger domain 164 208 IPR001841 -
Vifa1g02945 211 SMART ring_2 166 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02945 Vifa-Chr1 459206532 459207167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02945 91 209 C3H Transcription Factor Family AT1G53010 36.667 1.41e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02945 - - psat:127082020 361.688