Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02944 ATGGCTGATAATGTATTTTCACCATCTCCCTCCTTTAGCAAGTGTGTCATTCACCCTCAAGAATCCTCTGAGGATTTGCCCACACTTCCCTCCAAGAGATCTAAGGGTAGACCTAAGGGTTCCAAAAACAAACCCAAACCACCATCCATAATCAGGGTGGAGCCTGAAACCTATATGGAACCAATTTTGATTAAAATCCCTGCTGGAGAAGATGTTGTGGAATCGATAATCAAGACCGCTTGGCGTCATCAAGCTGATATCTCAGTCTTGAGAGGTTATGGTCTTGTCTCTGGAGTTACCCTTCTCGACTCCGGGTCCCAAGACTCTCCATTCACTATCCGCGGAGACTGTCAGATGATATCTCTCTCTGGAACATATGTTTATCCTAACTCGGATCGTGTTCCTTCTGAGTTCATCATCGATCCTGATTATTCTTCTTTTTCCATTCACTTGTCTGGTAATCATGGTCAAGTGTTTGGTGGAGTTCTTGGAGGAAAGGTTATGACTTCAAGTGTTGTCATGATTACTGCCACTCTTTTGAGGAAGCCTAAGTTTTACAAGGTAGCCTCGTTCGATGGAAGTGTTCGCGAAGTTGAAAAGATTGATCGTGGTGCTATCATTCGCAATGATGTTGTTGCACCTGAACTTAGAAACCATAACAACACTGCCAATGTGTTCAATTTTGGTGTTGGGAATTCCAGTTCAGCCCACCAAAGCCGCCAACTCCTCAATTCTCCTCATGCTTATGTGAATGCCATGCAGTGGAACAACTCCACTCGTACTAGTAATCACTAG 795 0.4403 MADNVFSPSPSFSKCVIHPQESSEDLPTLPSKRSKGRPKGSKNKPKPPSIIRVEPETYMEPILIKIPAGEDVVESIIKTAWRHQADISVLRGYGLVSGVTLLDSGSQDSPFTIRGDCQMISLSGTYVYPNSDRVPSEFIIDPDYSSFSIHLSGNHGQVFGGVLGGKVMTSSVVMITATLLRKPKFYKVASFDGSVREVEKIDRGAIIRNDVVAPELRNHNNTANVFNFGVGNSSSAHQSRQLLNSPHAYVNAMQWNNSTRTSNH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02944 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 58 183 - -
Vifa1g02944 264 CDD DUF296 61 176 IPR005175 -
Vifa1g02944 264 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g02944 264 MobiDBLite consensus disorder prediction 1 50 - -
Vifa1g02944 264 Gene3D - 60 198 - -
Vifa1g02944 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 25 192 IPR014476 GO:0003680
Vifa1g02944 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 61 178 IPR005175 -
Vifa1g02944 264 ProSiteProfiles PPC domain profile profile. 56 202 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02944 Vifa-Chr1 459127895 459128689 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02944 32 188 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.075 2.76e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02944 - - psat:127121088 429.869