Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02940 ATGGAAACTACATCCTCTGCGTTCATCTCTTCAAACACAGTAAGTTTTATGTATCACTTTTTGCATTGTTCTCATCTCTCTCATTCTCTGCCATTGATTTCAGCATTGGAGATTCACTTGAATCTTATGGTTGAGCTCTTTGTGATGATTGATTTTGAGTTTGAATATATTGAATTGATGTTAGATTTTAACTCCCTTGCAACCCCTGTTGTTATTGCAGAGGTGAAATATTCCACTGCTTCTTTGGCTGCTCAAAGTCTATTGCTAAGCACCAGCTATACAAGTAGAGGTTCTGCTTGTAAAGAGACTGGGCACGTGCCGCATCAGAACTCTATAAAAGCTGCTGAATATAGTTTAGACAATGTCAAGCCCTTTAAGGAGGGTGACACTGCATTGCACCTTGCAGCATCAAGAGGATTCAAAGATATATGTGAATGTATAATTGGAATGAATGGTGAAAGGAAGTATTTGATCGATATCGATAACAACAATGGAGAGAGTCCTTTGTTTCTTGCTGCATTGTCTTGGCAAAAACGAACGTTTGTTTATCTCTTCAACTTTAAACCGAGTAAGAGTGATTGCGATGTTGGTGGGAATTATTCTTATTCTAAAGATCTTATTAGAAGCAACGGAGATAGTATTCTTCACTGTGCCATCAGGAGAGAATTTTTCGATTTGGCGCTTATAATTATAGATAAATATCCGGATCTTATTGTCATTGCGAACAGACATGGATTTAGTCCTCTCAAACTTCTTGCTACTAGGCCCTCAGCATTCAAAAGTGGATGCAAGATGATATGGTGGAAGAGGATTCTATACCACTGTATACCTGTGGGAATCCTGAATGTGGAAGAAGCTGTCAAATATTGTGCCATGAAACAATATGAATCAAGCTCACACAAGAAATGTCCAAAGAACTATGACACATGTTATCTCTTTCTTCAAAAATGTAAAGAGTATGCTTATCCACTTATACCCTTTGTTAAGCGAGTGCTGATGAAAGAAACTACTTCTACTGCTGCATATGGATCTAAAAATATTGAAGAGAAACACAAAGTGTTCCAAAATTATCAACATCGCAATATATCAATGCAATCTAAACACAAACTTCTTCCAGAAAACTATGCTACATGTCTTTGGTTTATCAAGTTTGCATATATCTATACCCTTTGCCTTTCAGGAGTAGGGGTTGAAGAAATCAAAAAGATGAAACAAAAACACAAATGGAGTGGTCAACTATTGAACAGATTTATGGAGAACGCTTACGAATCGTATTTGGGAACCGGCACCAAACCAATACAATATCTGAGTGGAACAGATTTCATTTCTGCTTACAAGCCAAACCAAGGAGAAAATAACAGTGAGGAATGTGAACATATAATCCGTATAGCCAAGCCTGGTATGAGTAAGTCTTCTGTTGTTGATAGTGAAACAGGAAATAGTTTTGACAGCAGTTTTGTAATGCAGGTACAAGAAGAAGCGCAAAATGGACAAGTAGAATTGGAAAAACATGTCATCACAAAGACATTGACTAAGCCATCTGAGGCATATTATGATGCCAAAAACCTGCCACATGTTCTTGTGAGTACAAAAATATGTTTTGTGTGA 1608 0.3719 METTSSAFISSNTVSFMYHFLHCSHLSHSLPLISALEIHLNLMVELFVMIDFEFEYIELMLDFNSLATPVVIAEVKYSTASLAAQSLLLSTSYTSRGSACKETGHVPHQNSIKAAEYSLDNVKPFKEGDTALHLAASRGFKDICECIIGMNGERKYLIDIDNNNGESPLFLAALSWQKRTFVYLFNFKPSKSDCDVGGNYSYSKDLIRSNGDSILHCAIRREFFDLALIIIDKYPDLIVIANRHGFSPLKLLATRPSAFKSGCKMIWWKRILYHCIPVGILNVEEAVKYCAMKQYESSSHKKCPKNYDTCYLFLQKCKEYAYPLIPFVKRVLMKETTSTAAYGSKNIEEKHKVFQNYQHRNISMQSKHKLLPENYATCLWFIKFAYIYTLCLSGVGVEEIKKMKQKHKWSGQLLNRFMENAYESYLGTGTKPIQYLSGTDFISAYKPNQGENNSEECEHIIRIAKPGMSKSSVVDSETGNSFDSSFVMQVQEEAQNGQVELEKHVITKTLTKPSEAYYDAKNLPHVLVSTKICFV 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02940 535 Gene3D - 62 264 IPR036770 -
Vifa1g02940 535 PANTHER NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED 126 279 - -
Vifa1g02940 535 SMART ANK_2a 210 239 IPR002110 GO:0005515
Vifa1g02940 535 SMART ANK_2a 164 196 IPR002110 GO:0005515
Vifa1g02940 535 SMART ANK_2a 127 156 IPR002110 GO:0005515
Vifa1g02940 535 SUPERFAMILY Ankyrin repeat 126 277 IPR036770 -
Vifa1g02940 535 Pfam Ankyrin repeat 128 149 IPR002110 GO:0005515
Vifa1g02940 535 Gene3D - 457 533 IPR042087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02940 Vifa-Chr1 457831765 457835278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02940 487 532 Core DNA Replication Machinery Family AT5G67100 58.696 4.63e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02940 - - psat:127084750 617.846