Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02935 ATGGCTCCAGATAGAGATGCTCCACCTGAAAACCCACCTGAAAACTCACAAGAAAACTCACAAGAAAGAGTTGCTTCGGATACAAATGCTCCACCTGATACTGAAGCAAAAGAGTATAGCCGCTCATCTTCGTTTCTCACAGCATCCCGTGAAGCCGCTCCAAAATGGTTCACTAAGAGAACCAAGAAGGTCGGTATTGTTGGCAAATACGGCACCCGATATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTCAGTCAGCACAGTAAATTCTTCTGTGAGTTTTGTGGAAAGTATGCTGTTAAGAGAAAGGCTGTTGGTATTTGGGACTGCAAAGATTGTGGGAAGGTCAAGGCTGGTGGTGCTTACACTTTGAATACTTCCAGTGCTATGACTGTTCGGAGTACCATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAG 447 0.4519 MAPDRDAPPENPPENSQENSQERVASDTNAPPDTEAKEYSRSSSFLTASREAAPKWFTKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWDCKDCGKVKAGGAYTLNTSSAMTVRSTIRRLREQTES 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02935 148 SUPERFAMILY Zn-binding ribosomal proteins 66 138 IPR011332 GO:0006412
Vifa1g02935 148 MobiDBLite consensus disorder prediction 12 46 - -
Vifa1g02935 148 FunFam 60S ribosomal protein L37a 58 148 - -
Vifa1g02935 148 Gene3D - 57 148 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vifa1g02935 148 PANTHER ZGC:171772 47 147 - -
Vifa1g02935 148 MobiDBLite consensus disorder prediction 1 46 - -
Vifa1g02935 148 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 60 128 IPR002674 GO:0003735|GO:0005840|GO:0006412
Vifa1g02935 148 Pfam Ribosomal L37ae protein family 60 144 IPR002674 GO:0003735|GO:0005840|GO:0006412
Vifa1g02935 148 NCBIfam ribosomal protein eL43 58 147 IPR002674 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02935 Vifa-Chr1 456730782 456738104 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02935 57 148 Cytoplasmic Ribosomal Protein Gene Family AT3G60245 88.043 3.50e-58 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02935 K02921 - csin:114301577 181.415