Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02932 ATGGAAGTGCCAATATTATGTGCTGGTGTTGTTGACTTCTTAGCTTCTATCGTGGTAAACAATAGTTGCAACATCGATTCCGCATCTTTATTATTGTCAGAGACTAATGTTAATCTGGTTGATGAAGCATTAAGCATACTTCATAACCTTCATGTATCTGAAGCTGGATTGAAGAATCTACTAGCTTTCAAAAACGGTCAATTTATCGAGTCCTTAACAAAAGTTTTACAGAAAGGTTTCTTTGAATCAAGAGCTTATGCAGTTTTCTTGCTTAAATCTATGACAGAAGTAGCTGAACCAGTGCAGTTACTTCATCAAAAAACCGATTTATTCGTGGAACTGGTGCAAGTTTTGAAGGATCAAATATCACAAAAGGTATCAAAAGCAGCCCTTCAGACACTAATTATCCTCTGTCCATGTGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGAACAGTTCCTGTCTTAATAGAGCTTCTGTTAGAGAATTGCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTATTGGAATGTCTCTGTCAGTGTGCAGAAGGAAGAGCTGAACTTCTGAGACATGGTGCAGGAATGGCTGTTGTATCTGCGATCCGCGATGAAATAAACGATGTCGAGATAATCTACAAACCGCTTTCTGATATGCTCGAATGCGTAGGCGAAGCGGATGTAGTTTTCACAAGCACGGCATCAGAGAATCCTTTGATTTTAAAACAACATGTTAAGGAACTTCCTTTCGCAAGCGAAGAAATGGGACGAAAGTGCCTCTTCGTCGATATTTCTGTTCCGAGGAACGTAGGTTCGTGCGTCGATGACCTCGAATCAGTCAAAGTTTACAATGTCGACAACCTTAAAGAGGTAGTGGCTGCTAACAAAGAGGACAGACTAAGAAAAGCAATGGAAGCACAAGTGATCATCGGCGAAGAATCGGGCCAATTCGAAGCATGGAGAGACTCGTTAGAAACTGTTCCTACTATCAAGAAACTGAGAGCTTATGCTGAAAGGTTAAGGATTGCTGAGGTTGAGAAATGTTTAGGTAAAATGAGTGATGAGGATATAAATAAGAAGACACAAAAAGCAGTGGATGATCTTGGTAGAGGTATAGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGGAGTGATAGTAGGACTTTGAGTGAAACACTTGAGAATATGCATGCTTTGAATAGAATGTTTGGTCTTGAAACTGAGGTTTCTGTTTTGGAGCAGAAGATTAGAGCTAAAGTGGAGCAAAAACCATAG 1293 0.3952 MEVPILCAGVVDFLASIVVNNSCNIDSASLLLSETNVNLVDEALSILHNLHVSEAGLKNLLAFKNGQFIESLTKVLQKGFFESRAYAVFLLKSMTEVAEPVQLLHQKTDLFVELVQVLKDQISQKVSKAALQTLIILCPCGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLVLLECLCQCAEGRAELLRHGAGMAVVSAIRDEINDVEIIYKPLSDMLECVGEADVVFTSTASENPLILKQHVKELPFASEEMGRKCLFVDISVPRNVGSCVDDLESVKVYNVDNLKEVVAANKEDRLRKAMEAQVIIGEESGQFEAWRDSLETVPTIKKLRAYAERLRIAEVEKCLGKMSDEDINKKTQKAVDDLGRGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFGLETEVSVLEQKIRAKVEQKP 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02932 430 SUPERFAMILY ARM repeat 14 209 IPR016024 -
Vifa1g02932 430 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 304 392 IPR036453 GO:0008883|GO:0033014|GO:0050661
Vifa1g02932 430 Gene3D - 5 163 IPR011989 -
Vifa1g02932 430 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 200 428 - -
Vifa1g02932 430 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 306 411 IPR015896 GO:0008883|GO:0033014|GO:0050661
Vifa1g02932 430 Pfam Shikimate / quinate 5-dehydrogenase 200 292 IPR006151 -
Vifa1g02932 430 Gene3D - 185 293 - -
Vifa1g02932 430 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 204 300 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02932 Vifa-Chr1 456287478 456288770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02932 34 201 U-box Gene Family AT3G52450 50.877 3.36e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02932 K02492 - gmx:100819951 390.963