Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02917 ATGTTGAGAGCTTGTCAGTTACGAGCTGGTTTACCGATTCCAAAACTCTCTTCACTCTCCACAATTCCCTCACTCTTCTCTTTCTCTTCTCACTCCAAAATCCACACTTTTTCATCCACAACAAAACCCTTCCATTTTCACTCACCTTCTTCTCTTCCTCTTTCACCCTTTTCTTCTATCATGCCTCCAAAATCAACAGCTTCGTATAGTACCGGGGGTAGTGCTGTTGAAGGTGGTGGGGAAAGGGAAATATTGGTGCAGCATTTGTTGGTGAAAGAAGATGATCAGAAACTATTGTTGGATCTTCAACAGAGAGTTGCTAGAGGTGAAGATTTGAGTGATCTTGCTGTGGACCATTCAATTTGCCCTTCTAAAGATGAAGGAGGAATGCTCGGGTGGGTTAGAAAGGGACAAATGGTTCCTGAATTTGAGGAGGCTGCATTTAGTGCACCTTTAAACAAAGTTGTAAAGTGCAAGACAAAATTTGGATGGCACCTACTACAGGTTTTATCTGAAAGGGAAGAAGCGGTACTTAAATACATTCAACCTGATGAGCTGCATGTGAAATTTCAAGATCCCACCTTTTTAGAGGAGGCGCAGTTAATTGATGTTCGAGAGCCTGAAGAAGTGGCCACAGCATCTTTGCCGGGATTTACAGTTCTTCCCCTCCGACAATTTGGAACCTGGGGGCCTGAAATAAACACCAAATTTGATCCTCAAAAGGATACATATGTTCTGTGTCATCACGGCGCGCGGTCCATGCAGGTTGCCAAGTGGCTGCATTCACAGGGGTTCAGGAAAGTCTACAATATTTCTGGAGGAATTCATGCCTATGCGGTGCAGGTCGATCCGTCAGTTCCTACTTACTGA 870 0.4425 MLRACQLRAGLPIPKLSSLSTIPSLFSFSSHSKIHTFSSTTKPFHFHSPSSLPLSPFSSIMPPKSTASYSTGGSAVEGGGEREILVQHLLVKEDDQKLLLDLQQRVARGEDLSDLAVDHSICPSKDEGGMLGWVRKGQMVPEFEEAAFSAPLNKVVKCKTKFGWHLLQVLSEREEAVLKYIQPDELHVKFQDPTFLEEAQLIDVREPEEVATASLPGFTVLPLRQFGTWGPEINTKFDPQKDTYVLCHHGARSMQVAKWLHSQGFRKVYNISGGIHAYAVQVDPSVPTY 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02917 289 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 289 - -
Vifa1g02917 289 SMART rhod_4 181 284 IPR001763 -
Vifa1g02917 289 Pfam Rhodanese-like domain 196 279 IPR001763 -
Vifa1g02917 289 ProSiteProfiles PpiC-type peptidyl-prolyl cis-trans isomerase family profile. 81 171 IPR000297 GO:0003755
Vifa1g02917 289 Gene3D - 175 286 IPR036873 -
Vifa1g02917 289 ProSiteProfiles Rhodanese domain profile. 195 287 IPR001763 -
Vifa1g02917 289 Gene3D - 77 174 IPR046357 GO:0003755
Vifa1g02917 289 CDD RHOD_2 181 283 - -
Vifa1g02917 289 Pfam PPIC-type PPIASE domain 92 171 - -
Vifa1g02917 289 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 176 287 IPR036873 -
Vifa1g02917 289 SUPERFAMILY FKBP-like 82 170 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02917 82 289 Sulfurtransferasese or Rhodanese AT5G19370 67.308 3.36e-104 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02917 - - aprc:113846694 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02917 1 454431999 454434346 Vifa1g02917 1 454431999 454434346 ECH