Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02899 ATGTCTTTCACACTAGAAAGATGTGAAGATAACAACATGATCTTCACCATGGATTCTCAAAAAACAGTACCTGCTCCCTTCTTAACAAAAACATACCAACTTGTTGATGATCCTCTCACTGACCACATTGTCTCTTGGAGTGAAGATGAATCTACATTTGTTGTTTGGAGACCTCCAGAGTTTGCTAGAGATCTTCTTCCCAACTTTTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTAAATACCTATGGTTTCAAGAAAGTGGTTGCTGATAGATGGGAGTTTGCAAACGAATACTTCAAAAAAGGAGAAAAACATCTATTATGCGAAATCCACAGAAGAAAAACATCTCAAAACTATCAACAACAATACTACGAACAATCACCACAGATTCTCCAACAAGACGAAACCATATGTTGGATTGACAACACTCAATTACCACAACAATCTCCTAAACCAAACACTGATATCTTAATAGCACTCTCCGAGGACAATCAAAGACTAAGAAGAAAGAATCTAATGCTATTATCAGAACTCACTCACATGAAGAATCTCTACAATGATATCATATATTTCATTCAAAACCATGTGACTCCTGCATCATCCTTTGAACAAAGAACCAATAATAATGCTGCTATTTTGAAGCTTGTTGAGTTGGATTCATCGGTATCTCAGTTACCTAATGAGAGTGATGTTGTTAAGGATTGTAATGGTTCTTACGTGAAGCTCTTTGGTGTTCCTCTTTGTGGAAAAAAGAGATTGCATCCATGA 777 0.3642 MSFTLERCEDNNMIFTMDSQKTVPAPFLTKTYQLVDDPLTDHIVSWSEDESTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGEKHLLCEIHRRKTSQNYQQQYYEQSPQILQQDETICWIDNTQLPQQSPKPNTDILIALSEDNQRLRRKNLMLLSELTHMKNLYNDIIYFIQNHVTPASSFEQRTNNNAAILKLVELDSSVSQLPNESDVVKDCNGSYVKLFGVPLCGKKRLHP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02899 258 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g02899 258 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 208 IPR027725 -
Vifa1g02899 258 SUPERFAMILY "Winged helix" DNA-binding domain 24 116 IPR036390 -
Vifa1g02899 258 Gene3D - 19 118 IPR036388 -
Vifa1g02899 258 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g02899 258 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g02899 258 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g02899 258 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g02899 258 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g02899 258 FunFam Heat stress transcription factor B-4 19 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02899 Vifa-Chr1 452894358 452895245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02899 21 203 HSF AT1G46264 60.476 2.38e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa1g02899 HSF_DNA-bind 3.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02899 K09419 - gmx:100527682 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02899 1 452894358 452895245 Vifa1g02899 1 452894358 452895245 ECH