Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02892 ATGGAAGACGAGAAAACTAAGTTTTCATCTTTCTCACCATTCTCTAGGAACGAATTGTTAGAAGAGAATCCTCACACCATCAGCCTAAACAAAGTGGTGCCAACACCATCACTTGAACAACCTTCCTCAATTGAAGTTTTTGAGCTCTCTGAAGAGTCAACGATGGACAATCCTCCGTCCACCCATAGAAAATACCAGGGTAGACCTTCGGGGTCAAGGAATAAACCCAAACCACCCATGGTTATAATGGAAAATTCAATTGCTGACGTGCAAAACATTGTCCTCGAGATTCCTATCGGAAATGATGTTGTGGATTCCATAATCTACTTTGCTAGGAGTCATGAAGCTAGCATAGTTGTGATGAAGGGTTCTGGACTTGTATCCGACATTACTCTTCTCCAACCAAATTCTCGTATCCCGGCTTTCCAATTGGATGGTCCATTTAATGTGTTATCTCTAGCCGCTATTCTTTTTAAGAGGCCTGGATTTCATAGGGTGGTCACCACTGATGGGAATGTTCAATTATTTGAAGATGATGACGTCTCAATAATTTATGATGGTGTTAATGCTAGTGATTATGGTGGTGTTGAAGCCAGTGAAACTCAATCAGAAAATCAAGTTCTCCCTTAG 630 0.4111 MEDEKTKFSSFSPFSRNELLEENPHTISLNKVVPTPSLEQPSSIEVFELSEESTMDNPPSTHRKYQGRPSGSRNKPKPPMVIMENSIADVQNIVLEIPIGNDVVDSIIYFARSHEASIVVMKGSGLVSDITLLQPNSRIPAFQLDGPFNVLSLAAILFKRPGFHRVVTTDGNVQLFEDDDVSIIYDGVNASDYGGVEASETQSENQVLP 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02892 209 CDD DUF296 93 153 IPR005175 -
Vifa1g02892 209 MobiDBLite consensus disorder prediction 31 79 - -
Vifa1g02892 209 SUPERFAMILY AF0104/ALDC/Ptd012-like 90 172 - -
Vifa1g02892 209 MobiDBLite consensus disorder prediction 31 67 - -
Vifa1g02892 209 Gene3D - 90 176 - -
Vifa1g02892 209 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 52 161 IPR014476 GO:0003680
Vifa1g02892 209 ProSiteProfiles PPC domain profile profile. 84 209 IPR005175 -
Vifa1g02892 209 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 169 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02892 Vifa-Chr1 451793742 451794530 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02892 63 155 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 40.625 3.53e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02892 - - psat:127121743 155.606