Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02889 ATGGAGAATATTTTTCTTGAGATTCCTATTGGAAATGATGTTGTGGAGGCTATAATCGAGTTTGCTAGGAGTCATGAAGCTAGCATAGTTGTTATGAATGGTTCGGGTCTTGTATCCGACATTACTCTTCTCCAACCAGATTCTCGTGTTCCAACTTTTCAATTGAATGGTCCGTTTAACGTGTTATCTCTGACCGGAGTGTACTTAAACCCTAATCCTAATTGTGGTCGTGTTCCTCCTCGACTCATCAATGATCCATTATGTACTGCTTTTGCCCTTCAGCTGTCTGGATCTCGAGGCCAAGTGTTTGGCGGAGTGATTGGAGGGAATGTTAATGCTGCTACTGACATTCAGATTTCAGCTTCTCTTTTCAGGAGGCCTGATGTCATTCGGGCGATCACCACGGATGGAAATATTCAATTATTTGAAGATGATGACGTCCCAACAATTGTTGATAATGTTGATGTCGGTGATGGTGGTGTTGGTGGTGTTGATGGCCGTGAAAATGAATCTCAACCAGATAATCAAACTCTTCCTTAG 540 0.4241 MENIFLEIPIGNDVVEAIIEFARSHEASIVVMNGSGLVSDITLLQPDSRVPTFQLNGPFNVLSLTGVYLNPNPNCGRVPPRLINDPLCTAFALQLSGSRGQVFGGVIGGNVNAATDIQISASLFRRPDVIRAITTDGNIQLFEDDDVPTIVDNVDVGDGGVGGVDGRENESQPDNQTLP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02889 179 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 132 IPR014476 GO:0003680
Vifa1g02889 179 MobiDBLite consensus disorder prediction 158 179 - -
Vifa1g02889 179 ProSiteProfiles PPC domain profile profile. 1 145 IPR005175 -
Vifa1g02889 179 SUPERFAMILY AF0104/ALDC/Ptd012-like 4 139 - -
Vifa1g02889 179 Gene3D - 2 145 - -
Vifa1g02889 179 Pfam Plants and Prokaryotes Conserved (PCC) domain 4 124 IPR005175 -
Vifa1g02889 179 CDD DUF296 4 115 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02889 Vifa-Chr1 451436703 451437242 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02889 1 131 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.075 1.56e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02889 - - psat:127121743 242.276