Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02884 ATGCCAAGTGTGGCTGTAAAACTCTACAGCGTATTCTTCAAGTTCCTCTTGAAGCACCGTTTACAAAACTGGATTCAAGCCCAACCCGACAATAACTCCAACTCGTTTGGTATCACTTCACGACCCGAAGAATCCGTCGCTAACTCTAACCCTTCTTTTACCGACGGCGTCGCCACCAAGGATATCCACATCGATCCTTTCACTTCTCTCTCTATCCGAATCTTTCTTCCTCACTCCGCTCTTTCTCCTCCCGAGCCTCATTCCAAACCTAACTCCAAACCTAAACAACAAGCTCCCGAACCTGGATCTGTACGGAGAAGTAGCTATGGTCCTCCGTTCAGGGAAGAGCAGCTCCGAGGGAGGAATAGTAACGCTGTTGAGGGTTTGAATTTGATGGGCGCTGGTGTTGAAACCGGTGCCGGTTTGTACCGTGGTTACTCGCCGGCGTTGGATAATCGGCGGAGGAAATTACCGGTGATGTTGCACTTTCATGGTGGGGGTTGGATGAATATACACATTGTCCCACCACACGGAGCTGTCTTTGAAATAAGAGTTGCTGATGGATATGGTGCTCGTTGGAATGAAGATGGAAGTAAGTTTATTGGATTTTTAGAACCATACATGCAAGATGGGGAACCATCTCACACAGGTGTGCCTAGATTTACAGTCAACAACCAAGAACACAGCATCACTCAACAGCTAAATAATGGAGTTCGTGCACTTATGTTAGATACATATGATTTTGATGGAGATGTATGGCTATGTCATTCGTTTAAAGGTCAGTGTCATGATGTTACAGCATTTGAACCGGCTATTGATACGTTGAAGGAAATTGAGGCATTTTTATCGGCGAATACAAATGAAATTGTGACAATTATATTGGAAGATTATGTTGAATCTCCAAATGGTTTGACAAAGGTTTTCAGTGATGCTGGTCTTAAGAAGTATTGGTTTCCATTGGCTAGCATGCCAAAAAATGGTGAAAATTGGCCACTAGTTAGTGATTTGGTTGCTAAAAACCAAAGGTATTCATGCTTCAATTTCCAGGCATGCTCTTTGTGGATGTCGTTTGGTGTATATGTAACTGGTGTGCTCTTTCAGACAGCTGCTTTTGTCTCCTTTTTGCTTATGTCTCATGGTTACTGTATAATGTGCGAGCACCTTTCTTTAAATGAACGCCGTTCCACTGCCGCACTTGCATGTGTCTTTTACTTGACTCTAGTTGGTTACAAGGCTTCTGTTCCATACTTCACAGTGCTTCTGCTTCTAAATTATTTTATTTCATTCTATGTAATATTCCACCATATATCCTAA 1314 0.4285 MPSVAVKLYSVFFKFLLKHRLQNWIQAQPDNNSNSFGITSRPEESVANSNPSFTDGVATKDIHIDPFTSLSIRIFLPHSALSPPEPHSKPNSKPKQQAPEPGSVRRSSYGPPFREEQLRGRNSNAVEGLNLMGAGVETGAGLYRGYSPALDNRRRKLPVMLHFHGGGWMNIHIVPPHGAVFEIRVADGYGARWNEDGSKFIGFLEPYMQDGEPSHTGVPRFTVNNQEHSITQQLNNGVRALMLDTYDFDGDVWLCHSFKGQCHDVTAFEPAIDTLKEIEAFLSANTNEIVTIILEDYVESPNGLTKVFSDAGLKKYWFPLASMPKNGENWPLVSDLVAKNQRYSCFNFQACSLWMSFGVYVTGVLFQTAAFVSFLLMSHGYCIMCEHLSLNERRSTAALACVFYLTLVGYKASVPYFTVLLLLNYFISFYVIFHHIS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02884 437 Gene3D Phosphatidylinositol (PI) phosphodiesterase 196 361 IPR017946 GO:0006629|GO:0008081
Vifa1g02884 437 SUPERFAMILY PLC-like phosphodiesterases 224 357 IPR017946 GO:0006629|GO:0008081
Vifa1g02884 437 MobiDBLite consensus disorder prediction 28 52 - -
Vifa1g02884 437 Gene3D alpha/beta hydrolase 13 189 IPR029058 -
Vifa1g02884 437 PANTHER UNCHARACTERIZED 213 347 - -
Vifa1g02884 437 MobiDBLite consensus disorder prediction 81 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02884 Vifa-Chr1 450903059 450906734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02884 1 170 Carbohydrate Esterase AT5G14310 54.386 4.89e-46 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02884 - - rvl:131304512 246.899