Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02878 ATGGCACGAGGTACAAACCTTAGAGTTCATTTCAAGAACACTAGGGAAACAACGTTTTCCATCAGGAAGATGCCCTTGATCAAGGCTAAAAGGTACTTGGAAGATGTTCTTTCCCACCAACAAGCCATTCCATTTAGACGTTTCTGCCGTGGTGTTGGAAGGACAGCCCAGGCTAAGAACAGACACTCCATCAGACAAGGAAGGTGGCCAGCCAAATCTGCTAAGTTCATCCTTGATTTGTTGAAGAATGCAGAGAGTAACACTGAAGTGAAAGATCTGGATGTTGACGCTCTATATTTCTAA 303 0.4389 MARGTNLRVHFKNTRETTFSIRKMPLIKAKRYLEDVLSHQQAIPFRRFCRGVGRTAQAKNRHSIRQGRWPAKSAKFILDLLKNAESNTEVKDLDVDALYF 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02878 100 SUPERFAMILY Ribosomal protein L22 2 99 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vifa1g02878 100 Gene3D Ribosomal protein L22/L17 1 100 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vifa1g02878 100 PANTHER 60S RIBOSOMAL PROTEIN L17 2 99 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vifa1g02878 100 NCBIfam 50S ribosomal protein L22 2 99 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vifa1g02878 100 Pfam Ribosomal protein L22p/L17e 2 99 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02878 Vifa-Chr1 448101917 448102219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02878 2 100 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 80.808 2.50e-57 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02878 K02880 - csav:115711486 177.178