Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02867 ATGGCGGCAGAGTACGATCTAACCCCGCGTATGGCACCAAATCTCGACCGTCACTTAGTCTTCCCTCTCTTAGAGTTTCTTCAAGAGAGACAAATCTACAACGATAACCATATCCTAAAAGCCAAGATCGATCTCTTAAACAACACAAACATGGTTGATTACGCCATGGACATTCACAAGACACTCTACCAAACGGAAGATGTGCCTCAGGATATGGTTGAGCGAAGGGCTGATGTTGTGGCTAGACTCAAGTCGCTTGAAGACGCTGCTGCTCCGCTTGTTGCTTTTCTTCAGAATGCTGCTGCTGTTCAGGAGTTGAAAGCTGATAAGCACTATAATCTTCAGATGCTTAATGATAAATACCAGATCGGTCCTGCACAAATAGAGGCATTATACCAATATGGCAAATTTCAATTTGAATGTGGAAACTACTCGGGCGCTGCTGACTATCTTTATCAGTACAGAGCATTGTGCACTAATAGTGAAAGGAGTTTGAGTGCATTGTGGGGAAAGCTGGCAGCTGAAGTATTGATGCAAAACTGGGACGTTGCTCTCGAAGAGCTCAATCGCCTGAAGGAAATAATTGACTCAAAGAATTTTTCATCACCTCTAAATCAGGTACAAAGCAGAATATGGTTGATGCATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGAACACTGATAATTGATCTGTTTAACCAAGACAAGTATCTTAATGCAATCCAAACTAGTGCTCCGCACCTTTTGCGATACTTGGCCACTGCATTTATTGTCAACAAGCGCAGGCGGCCTCAACTCAAAGACTTTATAAAAGTTATTCAACAAGAGCAGAATTCATACAAGGACCCCGTCACTGAGTTTTTGGCTTGTGTTTATGTCAACTATGACTTTGATGGTGCACAGAAGAAGATGAGGGAGTGTGAAGAAGTAATTCTCAATGACCCCTTCCTTGGTAAACGAGTTGAAGACAGTAACTTCTCAACTGTACCATTAAGGGACGAGTTCCTTGAAAATGCTAGGCTATTTATTTTCGAGACATACTGCAGAATACATCATCGCATTGACATGGGAGTACTTGCGGAGAAGCTAAATTTGAATTATGAAGAGGCTGAGAGATGGATTGTGAATCTCATACGAGGCTTAAAGCTTGATGCTAAGATTGACTCACAAACTGGAACTGTTATCATGGAACCTAATCATCCAAATGTGTATGAGCAGTTGGTAGACCATACCAAGGCCCTTAACGGTCGAACTTACAAGTTGGTCACTCAACTTCTGGAACACGCACAAGGTCAAGCAGCTCGATAA 1317 0.4222 MAAEYDLTPRMAPNLDRHLVFPLLEFLQERQIYNDNHILKAKIDLLNNTNMVDYAMDIHKTLYQTEDVPQDMVERRADVVARLKSLEDAAAPLVAFLQNAAAVQELKADKHYNLQMLNDKYQIGPAQIEALYQYGKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDVALEELNRLKEIIDSKNFSSPLNQVQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQLKDFIKVIQQEQNSYKDPVTEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEDSNFSTVPLRDEFLENARLFIFETYCRIHHRIDMGVLAEKLNLNYEEAERWIVNLIRGLKLDAKIDSQTGTVIMEPNHPNVYEQLVDHTKALNGRTYKLVTQLLEHAQGQAAR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02867 438 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 435 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vifa1g02867 438 SUPERFAMILY TPR-like 121 194 IPR011990 GO:0005515
Vifa1g02867 438 Gene3D - 234 433 - -
Vifa1g02867 438 ProSiteProfiles PCI domain profile. 220 404 IPR000717 -
Vifa1g02867 438 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 333 417 IPR000717 -
Vifa1g02867 438 Pfam eIF3 subunit 6 N terminal domain 6 138 IPR019010 -
Vifa1g02867 438 CDD eIF3E 4 430 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vifa1g02867 438 SMART eIF3_N_2 6 138 IPR019010 -
Vifa1g02867 438 FunFam Eukaryotic translation initiation factor 3 subunit E 229 434 - -
Vifa1g02867 438 Pfam PCI domain 286 400 IPR000717 -
Vifa1g02867 438 PIRSF Transl_init_eIF3e 1 438 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vifa1g02867 438 SUPERFAMILY "Winged helix" DNA-binding domain 333 404 IPR036390 -
Vifa1g02867 438 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 3 430 IPR016650 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02867 Vifa-Chr1 446267668 446275832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02867 5 438 Eukaryotic Initiation Factors Gene Family AT3G57290 84.562 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02867 K03250 - gmx:100797748 832.017