Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02866 ATGGCGTCTAAAGCTATTGCTCCGATTGAACAACCCAGAGGTGATAATAAGAAAAAGAATTTAGGAGTTGAAGGAAGAAACAGAAAGGTTCTTGGAGATATTGGAAATCTTGTGATTAATCCAGCAGATCCTCATGCTAATGAGCCTAAGCGCATCACAAGAAATCAATTAGCTGCTATTGCTCAAGCAGCAGAGAAGAATAATATACTACCACCTGATGTTGTCAATGGGGACTTTGTGGCTGCGAAAAGGATGGAACAAGCTCAGAAACCTGCTGAACATGAAGTTATTGTTATCAGCTCTGATGATGAATCTGAAGTGAAAGAGAAACAGCGTCTGAAAGGAAGAAAGTTGAGAGAAAGATCAAAGATAAATGTCAGGACATTCAGTTCAGTGCTTTCAGCTAGAAGCAAGGCTGCTGGTAGAAGTGTGCCAAATGATATGGTAATAATGAACATTGATGCAACTGACAAGGATAATGAATTGGCTGCAACTGAGTACCTTGATGATATTTACAAGTTTTACAAACTCAGTGAAGATGATTGTCCTGTACAAGATTACATGGTTTCACAGCCCGATATAAATGCCAAGATGAGAGCGATTCTTGTTGATTGGTTGATTGAAGTTCATCGAAAATTCGAACTCATGCCAGAGACTTTTTACTTAACTCTTAATATTGTTGACCGATTCTTGTCCATGAAGGCTGTTCCTAGAAAGGAACTTCAGCTTGTTGGCATAAGCTCAATGCTTATTGCATCTAAATATGAAGAGATATGGGCACCAGAGGTTACTGACTTTGTATGCATATCAGACAATGCCTATATTAGAGAACAGGTTCTGGTTATGGAGAAAACAATCTTGGGAAAATTGGAATGGTATTTAACCGTTCCAACTCCTTATGTTTTTCTGGTTCGGTACATTAAGGCCTCTACTCCCTCTGATGAACAGATGGAGAATATGGTGAATTTCCTAGCTGAACTTTCTATGATGCATTATGTTACTGTATCATTGTATTCTCCTTCTATGATTGCTGCTTCTGCTGTGTATGCCGCAAGATCTACACTTAAGAGGAGTCCTTTTTGGACTGACACTCTCAAGCACTACACAGGCTACTCTGAGGAACAACTAAGGGATTGTGCCAAACTGATGGTCAGTTTTCATTCTGCTGCACCAGATAGTAAGCTGAGGGCGATTTACAAGAAATTCTGTGGCACAGATCGTTGTTCTGTTGCTCTTGTGGCTCCAGCCAATAACTTGTCAGCAGAGTCTTGA 1272 0.4002 MASKAIAPIEQPRGDNKKKNLGVEGRNRKVLGDIGNLVINPADPHANEPKRITRNQLAAIAQAAEKNNILPPDVVNGDFVAAKRMEQAQKPAEHEVIVISSDDESEVKEKQRLKGRKLRERSKINVRTFSSVLSARSKAAGRSVPNDMVIMNIDATDKDNELAATEYLDDIYKFYKLSEDDCPVQDYMVSQPDINAKMRAILVDWLIEVHRKFELMPETFYLTLNIVDRFLSMKAVPRKELQLVGISSMLIASKYEEIWAPEVTDFVCISDNAYIREQVLVMEKTILGKLEWYLTVPTPYVFLVRYIKASTPSDEQMENMVNFLAELSMMHYVTVSLYSPSMIAASAVYAARSTLKRSPFWTDTLKHYTGYSEEQLRDCAKLMVSFHSAAPDSKLRAIYKKFCGTDRCSVALVAPANNLSAES 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02866 423 SUPERFAMILY Cyclin-like 159 294 IPR036915 -
Vifa1g02866 423 CDD CYCLIN_AtCycB-like_rpt2 297 415 - -
Vifa1g02866 423 CDD CYCLIN_AtCycB-like_rpt1 150 292 - -
Vifa1g02866 423 SMART Cyclin_C_2 297 416 IPR004367 -
Vifa1g02866 423 SUPERFAMILY Cyclin-like 298 418 IPR036915 -
Vifa1g02866 423 PIRSF Cyclin_A_B_D_E 2 423 IPR046965 GO:0016538|GO:0044772
Vifa1g02866 423 MobiDBLite consensus disorder prediction 1 24 - -
Vifa1g02866 423 Pfam Cyclin, N-terminal domain 170 294 IPR006671 -
Vifa1g02866 423 FunFam Cyclin-B1-4 183 290 - -
Vifa1g02866 423 Gene3D - 170 411 - -
Vifa1g02866 423 FunFam G2/mitotic-specific cyclin-1 291 411 - -
Vifa1g02866 423 Pfam Cyclin, C-terminal domain 297 413 IPR004367 -
Vifa1g02866 423 ProSitePatterns Cyclins signature. 199 230 IPR006671 -
Vifa1g02866 423 SMART cyclin_7 301 385 IPR013763 -
Vifa1g02866 423 SMART cyclin_7 204 288 IPR013763 -
Vifa1g02866 423 Gene3D - 184 295 - -
Vifa1g02866 423 PANTHER CYCLINS 119 400 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02866 Vifa-Chr1 446011518 446013733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02866 1 420 Core Cell Cycle Gene Families AT2G26760 50.943 7.14e-142 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02866 K21777 - gmx:547782 541.962