Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02859 ATGGAAGATATTGAGTCTCAAAGAATTCATAAAGAGAGTTTTCGTGAAGAATCACCTGTTGTTTTGCACAAAGGAAAACGTCCTGTGACTCTTAAGTTTGAAGATGTTGTGTACAAAATCAACGACAAAAACGGTGGATTATTCAAGAAAAATGTAAAAGTAGAAGAGAAAACAATACTAAAAGGAGTAAATGGAGTTGTTGAACCAGGTGAGATGCTAGCAATGCTAGGTCCTTCAGGAAGTGGAAAAACAACACTCTTAACAGCGTTAGGAGGAAGACTTGGTGGAAAGCTTCGAGGAAAAATAACATACAATGATCAACCTTTTTCCAATGTCATAAAAAGAAACACAGGTTTTGTTACACAAGATGATGTTCTTTACCCTCACTTAACAGTGACAGAAACCCTAGTTTTCACAGCACTTCTTAGATTACCTAATACTCTCACAAAACAAGCCAAAGTCACACTTGCGAAAAACGTTATTGATCAACTTGGATTAACAAAGTGCGAAGATAGCATCGTTGGAAGTTCTCGTCTGAGAGGAGTTTCGGGTGGAGAGAGGAAAAGGGTTAGTATTGGACAAGAATTGCTTATAAACCCTAGTTTGTTGTTTCTTGATGAACCTACTTCTGGTTTGGATTCTACTACAGCTCAGAGAATTGTGTCGACTTTGTCGGATTTAGCAAAAGGCGGAAGGACTATTTTGATGACAATACATCAACCTTCAAGTAGATTATATTACATGTTTAATAAAGTTTTGTTGCTTGCTGAAGGGAATGTTGTGTATTTTGGAAAAGGGTCTGAAGCTATTCAACATTTTTCTAATATGGGTTATGCTCCTGCTTTGGCAATGAACCCTTCAGATTTCCTCTTGGATCTTGCAAATGGTATCTACACCGATGACGCGAAGCATGACCATGTTATAGACAAGCAGAAACTGATTTCAGCATTTAAGAGTAACTCTGATGAACAGTTGAAGCTAGAACATCATGAAATCAATGACTTTGATGGCAGATTTGAAGAGTCAGGTTCTGGAAAATGGCCTACTAGCTGGTCACAACAATTCTTTGTATTGTTAAGAAGAGATATTAAAGAGAGAAAGTATGAATCGTTTTCTGCCCTTAGGATTGGTCAAGTTCTTGTGGTTGCACTTATTTCAGGACTACTTTGGTATAAATCTGATATGTCACACATGCAGGATCAGATTGGACTATTATTCTTCATAACAGGCTTTTGGGGATTCTTCCCACTTTTCCAAGCAATCTTCACCTTCCCTCAAGAACTAATGATGCTAGAAAAAGAAAGATCCTCAGGAATGTACAGACTCTCGTCCTATTTCACCTCAAGAATGGTAGCTGACCTACCAATGGAGCTAGTCCTCCCAACAATCTTCCTTCTCATAACATATTTCATGGCAGGACTCAAAGCAACAGCGATACACTTCTTCCAAACACTTTTCACCCTCTTACTGAGTGTGTTGGTTGCACAAGGACTAGGGCTTGCACTTGGTGCTCTTGTACTTGATCAAAAATCAGCAACAACACTTGCATCAGTGCTGATGCTGGTTTTCTTACTTGCTGGTGGATTCTATGTTCAGAATGTTCCAAAGTTCATAGCTTGGGTGAAGTTTATTTCTATTAGTTACTATACATATCAGCTATTTATTGGATCACAGTATCATACTGGAGACACATACCCTTGTTCTGAAGGTCAGTGTCCTATTGAAGAGTTTCCTCCTATAAAACAAGTGGGGTTTGATTCGAAGACACAATGGATAGCTGCAATGGCTCTAGTAATAATGCTTATTGGTTATAGACTTATAGCTTATTTTGCTCTTATGAGGGTTGGAATCACAAAGAAATTGGCTTAG 1869 0.3831 MEDIESQRIHKESFREESPVVLHKGKRPVTLKFEDVVYKINDKNGGLFKKNVKVEEKTILKGVNGVVEPGEMLAMLGPSGSGKTTLLTALGGRLGGKLRGKITYNDQPFSNVIKRNTGFVTQDDVLYPHLTVTETLVFTALLRLPNTLTKQAKVTLAKNVIDQLGLTKCEDSIVGSSRLRGVSGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTLSDLAKGGRTILMTIHQPSSRLYYMFNKVLLLAEGNVVYFGKGSEAIQHFSNMGYAPALAMNPSDFLLDLANGIYTDDAKHDHVIDKQKLISAFKSNSDEQLKLEHHEINDFDGRFEESGSGKWPTSWSQQFFVLLRRDIKERKYESFSALRIGQVLVVALISGLLWYKSDMSHMQDQIGLLFFITGFWGFFPLFQAIFTFPQELMMLEKERSSGMYRLSSYFTSRMVADLPMELVLPTIFLLITYFMAGLKATAIHFFQTLFTLLLSVLVAQGLGLALGALVLDQKSATTLASVLMLVFLLAGGFYVQNVPKFIAWVKFISISYYTYQLFIGSQYHTGDTYPCSEGQCPIEEFPPIKQVGFDSKTQWIAAMALVIMLIGYRLIAYFALMRVGITKKLA 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02859 622 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 20 608 - -
Vifa1g02859 622 SMART AAA_5 69 259 IPR003593 GO:0016887
Vifa1g02859 622 FunFam ABC transporter G family member 22 47 276 - -
Vifa1g02859 622 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524|GO:0016887
Vifa1g02859 622 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 31 282 IPR003439 GO:0005524
Vifa1g02859 622 Pfam ABC transporter 60 210 IPR003439 GO:0005524
Vifa1g02859 622 CDD ABCG_EPDR 28 264 - -
Vifa1g02859 622 Pfam ABC-2 type transporter 239 306 IPR043926 GO:0140359
Vifa1g02859 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 276 IPR027417 -
Vifa1g02859 622 Gene3D - 49 277 IPR027417 -
Vifa1g02859 622 Pfam ABC-2 type transporter 353 559 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02859 Vifa-Chr1 444394070 444396333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02859 67 296 Calmodulin-binding Proteins AT2G36910 28.151 1.27e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02859 K05681 - gmx:100816135 878.626