Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02853 ATGAAGAAGAAACTTGATACTCGTTTTCCTGCTGGTAGGATTAAGAAAATTATGCAAGCTGATGAAGATATAGGGAAGATTGCTATGGCTGTGCCTCTTCTAGTTTCGAAAGCACTAGAACTATTTCTGCAAGATCTGTGTGATAAGACATATGATGTAACACTTAGGAGGGGAGCAAAGACTATGAATGCTTTTCATTTAAAACAGTGCGTACAAACTTTTAATATATTTGATTTTCTGAAAGATATTGTGAGCAAGGTTCCTGATTTAGGTGGTTCTGTTGCAACTGGCGACAACCAAACGGTCACTAAGAGGAGGAAAGTTGCTGAAGATGATGATAATGACAGCGAAGGAGAGACCAAGAGAAATAAAATGCCAGAACATTCACATAGCAATGGAAGAGGAAGAGGAAGAGGTAGGGGTAGACGCAGGGGTCGTGGCCGTGGTCGTGGAAATAAAGCTGTCGATCAAGAGATCTGTTCACATGTCAAATTTGAAGAAGATTCCGAAGCCTCAAAACAAAACGGAAGCCACACACAAAGTAATGAAAGCCCGGAATGTGTGCCAGAACCCGAGGAAGTTAAGCCGAGGTCACCAGTAAGACAACCCGAGGAATTAAAGCAGAGTTCACCAGTCAGAAAACCGGTCGTCGTTCGAAATTTCGATTTAAATTTGGAGCCAGAAGAGAACATGGATTTTTTATCCACACCAACTCCTGTCCCATCTTGTTCACAGCCTAGAAAATCAATTTCTGAAGAAAAGATTGAGGAATACCCTGGATGGTCCTTATCTGATATGGAAAAAATGGCTATTGATCCCATACAACTAGCCAGCTTAAGTAATAGGATTGATGAAGATATGGAAGATTATGATGAAGAAGTGTAG 885 0.409 MKKKLDTRFPAGRIKKIMQADEDIGKIAMAVPLLVSKALELFLQDLCDKTYDVTLRRGAKTMNAFHLKQCVQTFNIFDFLKDIVSKVPDLGGSVATGDNQTVTKRRKVAEDDDNDSEGETKRNKMPEHSHSNGRGRGRGRGRRRGRGRGRGNKAVDQEICSHVKFEEDSEASKQNGSHTQSNESPECVPEPEEVKPRSPVRQPEELKQSSPVRKPVVVRNFDLNLEPEENMDFLSTPTPVPSCSQPRKSISEEKIEEYPGWSLSDMEKMAIDPIQLASLSNRIDEDMEDYDEEV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02853 294 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vifa1g02853 294 MobiDBLite consensus disorder prediction 188 202 - -
Vifa1g02853 294 MobiDBLite consensus disorder prediction 103 134 - -
Vifa1g02853 294 MobiDBLite consensus disorder prediction 90 213 - -
Vifa1g02853 294 MobiDBLite consensus disorder prediction 228 253 - -
Vifa1g02853 294 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vifa1g02853 294 MobiDBLite consensus disorder prediction 135 149 - -
Vifa1g02853 294 FunFam dr1-associated corepressor homolog 1 86 - -
Vifa1g02853 294 MobiDBLite consensus disorder prediction 150 173 - -
Vifa1g02853 294 SUPERFAMILY Histone-fold 3 88 IPR009072 GO:0046982
Vifa1g02853 294 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02853 Vifa-Chr1 444055775 444058283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02853 1 283 CCAAT-HAP5 Transcription Factor Family AT3G12480 43.686 3.98e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vifa1g02853 CBFD_NFYB_HMF 1.9e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02853 K21752 - gmx:100814800 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02853 1 444055775 444058283 Vifa1g02853 1 444055775 444058283 ECH