Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02849 ATGTCAAGTGGAGCAATGCATTGGTGTTATGAATGCAGTCGGCCAATTGTGCTTGAAGGGAGAGACATTGTCTGCCCTTACTGTGATGACGGATTTGTACAAGAACTTGATGAGATGCGAGGCGTTACACCCCAAAACACCCTTCCGTCACGCTCGGGCGAGTTTCATCAAATGCCTGACTTATTTGATGCTATTCACGCTTTTATGGGGAACAGAGGTTCTGAAAACAGGTTTGGGCTTATGGACGCCGTTGATAATTTCATGAGGCATAGGATGGCTGGAATGCACCCGAACTTTGATGTTAGAGGGAGGTCCGGTTCGGCTGTCCCGGTTCCTGAACAGAGTTGGGGTGTTTATAGTTCTGGTCCTTTTTTAGTATTTCACGGTCAGGTTCCTGGATTAAACTTGCCTAATGGAAGCTCGAGAGGTGGTCCGAGGCGCGGTGATTTTGGTGACTACTTTATGGGTTCTGGACTGGAAGAACTCATTGAACAACTCACCATGAATGATCGGCGTGGTCCACCCCCAGCTGCTCGATCTTCAATTGATGCAATGCCGACGATTAGAATCACACAGGCGCATCTTCGCTCGGATTCACATTGTCCAGTCTGTAAAGAAAAATTCGAACTTGGTTCTGAAGCAAGAGAGATGCCATGCGACCATATTTACCATTCTGACTGTATTATTCCTTGGTTGGTTCAACATAACTCGTGTCCTGTTTGTCGTGTCGAGCTGCCACCACAAGGACAAGTTAGTTCTCGTGGTGGTGGTGGTAGTAATCGAAGTTGGGGTGGAGGAAGGAATGGTGGTAACAATGGTGGAAATGGTAGCTCAAGTAACAGGGAGAGTGACCGTCAGAACAATGGAAGGAGAAATCCATTTTCGTTTCTGTGGCCATTCCGTTCTTCTTCTTCTAGTTCAAACAATAATCAATATTCTGAGGGAAGCACTTCTTCAACCAATGCTGATCAGAATAATGGAACTAGTTACCATGGATGGCACGATAACTAA 1011 0.4619 MSSGAMHWCYECSRPIVLEGRDIVCPYCDDGFVQELDEMRGVTPQNTLPSRSGEFHQMPDLFDAIHAFMGNRGSENRFGLMDAVDNFMRHRMAGMHPNFDVRGRSGSAVPVPEQSWGVYSSGPFLVFHGQVPGLNLPNGSSRGGPRRGDFGDYFMGSGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSDCIIPWLVQHNSCPVCRVELPPQGQVSSRGGGGSNRSWGGGRNGGNNGGNGSSSNRESDRQNNGRRNPFSFLWPFRSSSSSSNNNQYSEGSTSSTNADQNNGTSYHGWHDN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02849 336 MobiDBLite consensus disorder prediction 246 336 - -
Vifa1g02849 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 136 246 - -
Vifa1g02849 336 SMART ring_2 201 241 IPR001841 -
Vifa1g02849 336 CDD RING-H2_RNF126-like 201 242 - -
Vifa1g02849 336 MobiDBLite consensus disorder prediction 252 336 - -
Vifa1g02849 336 FunFam E3 ubiquitin-protein ligase RING1-like 165 248 - -
Vifa1g02849 336 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Vifa1g02849 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 248 IPR013083 -
Vifa1g02849 336 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Vifa1g02849 336 Pfam Ring finger domain 200 242 IPR001841 -
Vifa1g02849 336 SUPERFAMILY RING/U-box 181 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02849 Vifa-Chr1 443333092 443334102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02849 145 250 C3H Transcription Factor Family AT5G01980 43.519 1.11e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02849 K11982 - gmx:100813674 515.768