LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g02845	ATGGCCGTTACTTTCTCAGATCTACACACCGAAGAGGGTCTCAAATCCCTCAACGATTTCCTCTCTGGAAAAACCTATATTTCAGGTGATCAATTGACAAAGGATGATATCAAGGTTTATGGAGCTGTTACTGAGAAGCCAAGTGGGTCTTTTCCCAATGCTGTTAATTGGTATGATGCTGTATCTACAAGCCTTTCTGCTAGTTTTCCTGGAAAAGCTCAAGGTGTGAAGTTTACAGGAAGTGGTTCTGCTCCTGCTGCAGAAGCACCTGCCAAAGCAGATGCGCCCGCTGCTGAAGATGATGATGATCTTGACCTCTTTGGTGATGAAACAGAAGATGAGAAGAAGGCAGCAGAGGAAAGGGAGGCAGCTAAAAAGCCTGCCAAGAAGAAAGAAAGTGGCAAGTCTTCCATTCTGCTTGATGTTAAGCCTTGGGATGATGAGACTGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTGTTGATATTCCCGGTTTAACCTGGGGAGCATCTAAGCTTGTTGCTGTCGGATACGGGATCAAGAAGCTACAAATCATGTTGACAATCGTCGACGACCTTGTCTCCGTGGACGATCTCATTGAGGAGAGACTCACAGTTGAGCCAATTAATGAGTATGTCCAGAGTTGTGACATTGTTGCATTCAACAAAATCTAA	675	0.4504	MAVTFSDLHTEEGLKSLNDFLSGKTYISGDQLTKDDIKVYGAVTEKPSGSFPNAVNWYDAVSTSLSASFPGKAQGVKFTGSGSAPAAEAPAKADAPAAEDDDDLDLFGDETEDEKKAAEEREAAKKPAKKKESGKSSILLDVKPWDDETDMKKLEEAVRSVDIPGLTWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLIEERLTVEPINEYVQSCDIVAFNKI	224

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g02845	224	MobiDBLite	consensus disorder prediction	79	132	-	-
	Vifa1g02845	224	Pfam	EF-1 guanine nucleotide exchange domain	137	224	IPR014038	GO:0003746\|GO:0006414
	Vifa1g02845	224	Gene3D	-	128	224	IPR014717	-
	Vifa1g02845	224	SMART	EF1_GNE_2	135	224	IPR014038	GO:0003746\|GO:0006414
	Vifa1g02845	224	MobiDBLite	consensus disorder prediction	110	132	-	-
	Vifa1g02845	224	SUPERFAMILY	GST C-terminal domain-like	10	64	IPR036282	-
	Vifa1g02845	224	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	213	224	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Vifa1g02845	224	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	8	224	-	-
	Vifa1g02845	224	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	100	108	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Vifa1g02845	224	CDD	EF1B	133	224	IPR014038	GO:0003746\|GO:0006414
	Vifa1g02845	224	FunFam	Elongation factor 1-beta 1 like	129	224	-	-
	Vifa1g02845	224	SUPERFAMILY	eEF-1beta-like	132	224	IPR036219	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g02845	Vifa-Chr1	442790660	442792628	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g02845	1	224	Eukaryotic Initiation Factors Gene Family	AT5G12110	72.052	9.82e-105	300

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g02845	K03232		-	gmx:100816855	306.219