Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02844 ATGGGAGTTCAAGAAAATGACACACTTTCACAATTGAGTTTACCACCTGGTTTTAGATTTTACCCAACCGATGAAGAGCTTCTTGTTCAATATCTTTGTCGCAAAGTTGCTGGTCATCATTTTTCTCTTCAAATTATTGCTGAAATTGATCTCTACAAATTCGACCCATGGGTTCTTCCAAGTAAAGCGATTTTTGGAGAGAAAGAATGGTATTTCTTTAGCCCGAGAGATAGAAAGTATCCAAACGGGACTAGACCCAATAGAGTAGCTGGATCTGGATATTGGAAAGCTACTGGAACTGATAAGATTATCACAAACGAAGGTAGAAAAGTTGGTATCAAAAAAGCACTTGTTTTCTATGTTGGAAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAGTATCGTCTTCTTGATTCTTCTCGAAACAACGGCGGCACCAAGTTAGATGATTGGGTTCTGTGTCGAATATACAAGAAAAACTCAAGTGCACAAAAAGCGAATCCAAACGGCGTCGTTTCGAGCAGAGAATACACACAATACAGCAACGGTTCATCTTCGTCTTCTTCCTCTCACATCGACGAAGTTCTGGAATCACTTCCAGAGATCGACGACCGTTGTTTCATGCTGCCACGTGTCAATTCACTGAGAACGATGCAGCATCGTCAACAAGAAGAAGAGAAGGAAGCGCAAACGCAAGGAATGGTGAATTTTGGTGGTTGTAATGAGGTTTATGTACCTTCTGTTTCCACGGTGCCGGAGAAGAAACTGACGGAGGAGGAGGTTCAGAGTGGGGCGAGAGCGAACCGGGTTGAGAATTCTGGTTTATTTCCAGGAATGGGGTATTCTAATTCAGTTGACCCGTTTGGTTTTAGATACCCGGTTCAACCGGTTGGATATGGGTTCGGGCAATAA 921 0.4245 MGVQENDTLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRNNGGTKLDDWVLCRIYKKNSSAQKANPNGVVSSREYTQYSNGSSSSSSSHIDEVLESLPEIDDRCFMLPRVNSLRTMQHRQQEEEKEAQTQGMVNFGGCNEVYVPSVSTVPEKKLTEEEVQSGARANRVENSGLFPGMGYSNSVDPFGFRYPVQPVGYGFGQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02844 306 MobiDBLite consensus disorder prediction 167 195 - -
Vifa1g02844 306 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vifa1g02844 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 219 - -
Vifa1g02844 306 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Vifa1g02844 306 FunFam NAC domain-containing protein 72-like 23 167 - -
Vifa1g02844 306 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Vifa1g02844 306 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02844 Vifa-Chr1 442640805 442642133 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02844 1 287 NAC Transcription Factor Family AT4G27410 61.184 2.04e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g02844 NAM 5.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02844 - - tpra:123895211 518.079