Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02842 ATGGATTGCACTGATCAAAAGAATGAGTTCCATAAAAAGGAAAATAGGGAAAATTCCATGAAATCGAAAGAGAAGAAGAAGAGTTTAGTTTGTGAAGTTTATGATAAACCAAAGGTTGATCATGAAGAAGGATCAACAAGCTCAAAAACTTACGTGTGTGAGTTTTGTAACAAAACCTTTAGTTGTGGAAAAGGATTGGGTGGCCATAAAAGAATTCACATTCAAGCCCTAAAGAAAGAGGGTTTGGCTAAAACAAAGGCAAAATGCAAATCATCTTATAATGATGAGAAACAAAGATGTGATGTTTGCAAAAAGGATTTCCCATCCAAGAAGGCCTTATATGGCCACTTAAGATCTCACCCTAAAAGGGAATGGAGACGTGTTCATTCTAAGAAGAACGATAATTATGATTATGATTATGATTATGGTTATGATAATGATGATGATCAAGATCAAGATCAATATTTTCTTGGTGAACATAAAGAATTGGTTATTGATGATGATTCAATATCTTGGCCACCTAGATCTTTTAAAGCCAATAAAAGGGGACGTGCACGAGTTTTCGACGAAGAAGTTTTTAATGGTGCTCAAACACTCATGTATCTCTCTAGGGATCAAGGATTTCATGACAAGCTCAAGAATATGGATATTGAGAAGAAAGTGCTAGTTGTTGATGAAATTGATGAAACACGAATGAGGAATGAGAATAACAAAAGAATGAAGTTGATGATGAAATTGAAGAATCCATGTTCAACTTTTAAAGACAATATCTTGATGGAAAAAGATTGCTTCCAACTTGGCTCTTATGATGATAAAGAGAAGAATTTTTATAGGTCTCAAACTGAGATTGGAGAATCAAGTCAATCAAAATCAAGAGTTATTGAAGGGTTTTGTTTGAATGAGGAACCAAATGAAGTGAGTGAAGAATCAAACTAG 936 0.3397 MDCTDQKNEFHKKENRENSMKSKEKKKSLVCEVYDKPKVDHEEGSTSSKTYVCEFCNKTFSCGKGLGGHKRIHIQALKKEGLAKTKAKCKSSYNDEKQRCDVCKKDFPSKKALYGHLRSHPKREWRRVHSKKNDNYDYDYDYGYDNDDDQDQDQYFLGEHKELVIDDDSISWPPRSFKANKRGRARVFDEEVFNGAQTLMYLSRDQGFHDKLKNMDIEKKVLVVDEIDETRMRNENNKRMKLMMKLKNPCSTFKDNILMEKDCFQLGSYDDKEKNFYRSQTEIGESSQSKSRVIEGFCLNEEPNEVSEESN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02842 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Vifa1g02842 311 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Vifa1g02842 311 SMART c2h2final6 51 73 IPR013087 -
Vifa1g02842 311 SMART c2h2final6 98 120 IPR013087 -
Vifa1g02842 311 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g02842 311 Gene3D Classic Zinc Finger 48 120 - -
Vifa1g02842 311 Pfam C2H2-type zinc finger 99 122 - -
Vifa1g02842 311 Pfam C2H2-type zinc finger 51 73 - -
Vifa1g02842 311 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 49 278 - -
Vifa1g02842 311 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Vifa1g02842 311 SUPERFAMILY beta-beta-alpha zinc fingers 49 120 IPR036236 -
Vifa1g02842 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 73 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02842 49 128 C2H2 Transcription Factor Family AT2G26940 30.909 9.03e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g02842 zf-C2H2_6 7.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02842 - - tpra:123922668 254.988