Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02841 ATGGAAAGTACTGATTCGTCGACGGGTTCGCAACAGCCGAATCTCCCGCCGGGGTTTCGATTTCATCCTACCGATGAAGAGCTTGTTGTTCATTATCTCAAGAAAAAAGCAGCTTCTGCTCCTCTGCCTGTAGCCATCATAGCTGAAGTTGATCTCTACAAATTTGATCCATGGGAACTACCAGCTAAGGCAACGTTTGGGGAGCAACAGTGGTATTTCTTTAGTCCAAGGGATAGGAAGTATCCTAATGGAGCGAGGCCAAACAGGGCAGCAACATCGGGTTATTGGAAGGCAACGGGTACTGATAAGCCGGTATTGACTTCAAATGGAACACAAAAAGTTGGTGTGAAGAAAGCTTTGGTTTTCTATGGCGGAAAACCTCCCAGAGGAATCAAAACCAATTGGATCATGCATGAGTATAGGCTTGCTGATAATAAGCCTAATAATAGGCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACTCTCTTAGGCTTGATGATTGGGTTTTGTGTCGGATCTACAAGAAAAGCAACACACATCGATCACCGGTGGAGCACGATAGGGAAGATTCAATGGAAGACATGATAGGAGGAGTACATCCGTCGATCAACGTGGGTCAAATGAATGCGGCGACAAGATTTCATCATTTTTCAAAGATATCATCAAGTAGTTACAACAATACATTGTTGGAAACTGATCAAAATTTACTAGAAGGAATGATGATGAACAACAACAATTTAGGAGGTTCAAATTCAAAGGGAGGAGAGTTATCTTTTGTACCAAGCATGACAACATCTTCAAATGCAAATTCACCTTCCAAGAGAACACTCTCTTCTCTTTACAATTGGAATGATCATGAAGATGTTGCAGCTCAAGTTGGTACTTCATCATCAAACAAAAGGTTCAATTTAGAAAGTGTTGTGAGAAATGATCATCAAGAAAATGGTACTTCTTTTGCTTCTCTCCTTAATAATCTTCCTCAAACATCTTCATTGCATCAACAACAACAACAACAAACAATGTTGGGATCAATACCATATCAAATTCAAGGCATGAATTGGTATGGTTAA 1071 0.4062 MESTDSSTGSQQPNLPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPAKATFGEQQWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSNGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPVEHDREDSMEDMIGGVHPSINVGQMNAATRFHHFSKISSSSYNNTLLETDQNLLEGMMMNNNNLGGSNSKGGELSFVPSMTTSSNANSPSKRTLSSLYNWNDHEDVAAQVGTSSSNKRFNLESVVRNDHQENGTSFASLLNNLPQTSSLHQQQQQQTMLGSIPYQIQGMNWYG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02841 356 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g02841 356 SUPERFAMILY NAC domain 7 176 IPR036093 GO:0003677|GO:0006355
Vifa1g02841 356 MobiDBLite consensus disorder prediction 1 17 - -
Vifa1g02841 356 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Vifa1g02841 356 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Vifa1g02841 356 FunFam NAC transcription factor 56 24 181 - -
Vifa1g02841 356 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Vifa1g02841 356 PANTHER NAC TRANSCRIPTION FACTOR 56 15 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02841 Vifa-Chr1 441463723 441465069 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02841 1 355 NAC Transcription Factor Family AT3G15510 53.067 2.00e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g02841 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02841 - - gmx:100170710 524.242