Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02839 ATGCAACCACAAGTTTCTAACCTCAATCCAAAGGCTCAACCCTTCTATCCACAACACAACCTTGTAGTAGTAACACCTAAAACTCAATCCAAACCCCCTTCTCCATTCTACAACCCATTACCTGCTCCTGAGGTTTCTCCAAGTCCACTGGTTGCTGCTGATAGCCCAAGTCAACTAATGTTAGGTCTACCTTCTAAGGGAAAACACCATTCATATCACTTGACATTAGTTCCATGCATTGCTATTGCAGTTACCGCTATTGCTTTTGTGATGATCGTAGTCTTGATAGTTCTAATTCGCCAAAAGAGCAGAGAGCTAGATGATCCTGATAACATTGGTAAACCCCATTCAAAAACCCTACCTTCTATGCCAACATGGAAATTTCAAGAAGGCTCTTCATCTATGTTTCGAAAGTTCAACTTCAAAGAGATAAAGAAAACAACAGAGGGGTTTAGCACCGTCATTGGCCAAGGGGGATTTGGAACAGTATATAAAGCTCATTTTAGTGATGACCAAGTTGTAGCAGTAAAGCAGATGAACAGAATCTCAGAACAGGCAGAGGAAGACTTCTGCAGGGAGATTGAGCTTCTTGCTCGGCTGCACCATCGACATCTTGTTGCATTACGAGGCTTTTGCATCAATAAACAAGAAAGGTTTATGTTGTATGAGTACATGGGAAATAGAAGCTTAAAAGACCATCTTCATTCCCCTGGTAAAACACCATTAAGTTGGCGAACTAGAATCCAAATTGCCATTGATGTAGCTAATGCATTGGAGTACCTTCATTTCTATTGCGATCCTCCTCTGTCTGATTTTGGCCTTACACAAGCTTCTAAAGATGGTTCGGAAGAGAAGCAAAGGGAAATTGGAGCTATTCCTATGGTTAACACTCCTCAACTTGCTTATGCTGTTCAAACCTCTGCTCCTGCTCAATCCAAACCTGCTCCCAAGAAGGAACGTCCCTTGTGTGCATATTGTGGTATTCTTGGTCACCTCAAGGATAAGTGCTTCAAGCTTCACGGTCATCCTCACCGACGCACATGCTCAGCTCCGCGAACTCGCATCAGCCGTCCTTACTCTGCCATACGCAAACGCACAGCATAA 1104 0.4321 MQPQVSNLNPKAQPFYPQHNLVVVTPKTQSKPPSPFYNPLPAPEVSPSPLVAADSPSQLMLGLPSKGKHHSYHLTLVPCIAIAVTAIAFVMIVVLIVLIRQKSRELDDPDNIGKPHSKTLPSMPTWKFQEGSSSMFRKFNFKEIKKTTEGFSTVIGQGGFGTVYKAHFSDDQVVAVKQMNRISEQAEEDFCREIELLARLHHRHLVALRGFCINKQERFMLYEYMGNRSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLSDFGLTQASKDGSEEKQREIGAIPMVNTPQLAYAVQTSAPAQSKPAPKKERPLCAYCGILGHLKDKCFKLHGHPHRRTCSAPRTRISRPYSAIRKRTA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02839 367 Gene3D Transferase(Phosphotransferase) domain 1 225 301 - -
Vifa1g02839 367 ProSitePatterns Protein kinases ATP-binding region signature. 155 177 IPR017441 GO:0005524
Vifa1g02839 367 Gene3D Phosphorylase Kinase; domain 1 118 224 - -
Vifa1g02839 367 ProSiteProfiles Protein kinase domain profile. 149 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02839 367 PANTHER OS01G0750732 PROTEIN 12 269 - -
Vifa1g02839 367 Pfam Protein tyrosine and serine/threonine kinase 152 262 IPR001245 GO:0004672|GO:0006468
Vifa1g02839 367 FunFam Putative receptor-like protein kinase 117 224 - -
Vifa1g02839 367 SUPERFAMILY Protein kinase-like (PK-like) 129 281 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02839 Vifa-Chr1 441430806 441432259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02839 51 282 Receptor kinase-like Gene Family AT3G19300 61.265 3.63e-90 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vifa1g02839 PK_Tyr_Ser-Thr 1.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02839 - - gmx:100807955 380.178