Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02835 ATGGGAAACTGTTTCAGAAAACCTGCTGTTTGTCATAATTCTTCAACAAGTTTATTTGGAAGTACAAAGACTCAAAGTAAGCCAAAGCAGACTTCGAATTCTCCCGAACCGAAAAGAAATTTGGATATTTCCTGGTCGATTGACGACAAATTCATCTCTAATGATGTTAAGTCCTTTAGCTTCAATGATCTAAAGGAGGCGACAAGGAACTTCCGCCAAGAAAATTTGATTGGCGAGGGAGGGTTTGGATTTGTCTACAAAGGATGGATAGATGAGAATACTGGTGCTCCTACAAAACCAGGAAATGGAATTGTAGTAGCCATTAAGCAGCTTAAACCAGAAAGTTTTCAAGGTCACAAGGAATGGCTTGCTGAAGTGAATTATCTAGGCCAACTTCACCATGAAAATTTGGTGAAGCTTATTGGTTATTGTTCAGAAGGTAAAAACAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCACTTATTCAGAAAAGGCGTTCAACCGATTTCCTGGATGACACGAATCAGTATTGCGATCGGTGTTGCAAGAGGACTAGCATTCTTACATTCCCTTGATGCAAATGTTATTTATCGCGATTTAAAAGCTTCCAACATCCTACTCGATTCGGATTTCAACGCAAATCTTTCGGATTTCGGCTTAGCAAGAGACGGTCCAACCGGAGATAACACTCATGTTTCAACTCGAATTATCGGAACTCATGGTTACGCGGCCCCAGAATATGTAGCTACAGGTCATTTAACACTGAGGAGCGATGTATACAGCTTCGGCGTCGTCCTATTAGAGCTACTAACAGGACGGCGCGTAGTCGATGACGATAGACCGGCATATTCGGAAGAAACGCTAGTGGATTGGGCAATGCCTTTTCTGAGTGACAGCAGAAGAATATTGAGAATCATGGATACAAAATTAGGCGGTCAATACTCGAAAAAAGGAGCTCAAGCTGCAGCTGCACTTGTTCTAAAGTGTCTTCATACTGATCCTAAACATAGACCAACTATGGTAAATGTTTTAGCTGCATTGGAAGCATTACAATCCTCAAATTCTGCACCAAGGACACCAAAATCTGGAACCGATCATAATCATCATGCAACAAAGCATTCTAGTCATCATCATTCACATAAGTCAATTGCGAATAATACTCGAAAACATTGA 1188 0.4057 MGNCFRKPAVCHNSSTSLFGSTKTQSKPKQTSNSPEPKRNLDISWSIDDKFISNDVKSFSFNDLKEATRNFRQENLIGEGGFGFVYKGWIDENTGAPTKPGNGIVVAIKQLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCSEGKNRLLVYEFMQKGSLENHLFRKGVQPISWMTRISIAIGVARGLAFLHSLDANVIYRDLKASNILLDSDFNANLSDFGLARDGPTGDNTHVSTRIIGTHGYAAPEYVATGHLTLRSDVYSFGVVLLELLTGRRVVDDDRPAYSEETLVDWAMPFLSDSRRILRIMDTKLGGQYSKKGAQAAAALVLKCLHTDPKHRPTMVNVLAALEALQSSNSAPRTPKSGTDHNHHATKHSSHHHSHKSIANNTRKH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02835 395 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 157 366 - -
Vifa1g02835 395 MobiDBLite consensus disorder prediction 16 41 - -
Vifa1g02835 395 PANTHER OS01G0588500 PROTEIN-RELATED 31 356 - -
Vifa1g02835 395 Gene3D Transferase(Phosphotransferase) domain 1 157 380 - -
Vifa1g02835 395 ProSiteProfiles Protein kinase domain profile. 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02835 395 Pfam Protein tyrosine and serine/threonine kinase 74 351 IPR001245 GO:0004672|GO:0006468
Vifa1g02835 395 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
Vifa1g02835 395 MobiDBLite consensus disorder prediction 375 395 - -
Vifa1g02835 395 Gene3D Phosphorylase Kinase; domain 1 47 156 - -
Vifa1g02835 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vifa1g02835 395 SMART serkin_6 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02835 395 SUPERFAMILY Protein kinase-like (PK-like) 43 352 IPR011009 -
Vifa1g02835 395 FunFam Serine/threonine-protein kinase BIK1 41 156 - -
Vifa1g02835 395 MobiDBLite consensus disorder prediction 16 40 - -
Vifa1g02835 395 CDD STKc_IRAK 77 355 - -
Vifa1g02835 395 MobiDBLite consensus disorder prediction 357 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02835 Vifa-Chr1 440200179 440202389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02835 3 352 Glycoside Hydrolase AT3G07070 47.139 3.31e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g02835 PK_Tyr_Ser-Thr 5.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02835 - - gmx:102664409 624.394