Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02829 ATGAGTCAGCCAAAGGTTAAGCGTAGAGTCGGTATATATGAGATTGGGAGGACAATCGGGGAGGGATCGTTTGCGAAAGTGAAATTTGCGAGGAACTCTAAGACCGGTGAAGCCGTGGCTATCAAAATTATTGACAAGGAGAAAGTTCTCAGGCACAAGATGTCTGAGCAGATCAAGCGAGAAGTAGCTACGATGAAGTTAATCAAGCATCCAAATGTTGTTAGACTATATGAGGTTATGGGAAGCCGAACAAAAATATATATTGTATTGGAGTTTGTGACTGGCGGGGAGCTTTTCGACAAAATTGTAAACCATGGACGAATGGGTGAAAATGAAGCGCGTAGGTATTTCCAGCAGCTTATAAACGTCGTCGATTATTGTCACAGCAGAGGTGTCTATCACAGAGACCTTAAGCCAGAAAATTTACTTTTAGATTGTAATGGTGATCTTAAAGTATCCGATTTTGGGTTGAGTGCACTCTCCCAGCAAGTTAGGGACGATGGACTTCTCCATACGACATGTGGAACTCCGAATTATGTTGCTCCAGAGGTTCTTACCGATAGAGGCTATGATGGAGCGAATGCGGATTTGTGGTCATGCGGAGTGATCCTCTTTGTATTGGTTGCAGGTTACTTACCTTTTGATGATCCTAATCTTATGGAACTCTATAAAAAGATCTCATCTGCCGATTTTACTTGCCCCCCATGGCTTTCTTTCAGTGCAAGGAAATTAATCACTCGAATCTTGAATCCCAATCCTACGACGCGTATCACAATGGCCGAGATTTTGGAAGATGAATGGTTTAAGAAAGACTATAAGCCTCCGGTTTTTGAAGAGAGTGGCGAAACCAACCTCGACGATGTAGAAGCTGTCTTTAAAGATTCAGAAGAGCACCATGTGACGGAAAAAAAAGAAGAGCAGCCAACATCGATGAATGCGTTTGAACTGATTTCCATGTCGAAAGGACTCAACCTCGAAAACTTGTTTGATATAGAACAGGGGTTTAAAAGGGAAACAAGGTTCACGTCAACATCTTCGGCCGACGTGATAATCAACAAGATTGAAGAAGCTGCTAAACCTCTCGGCTTCGATGTGCAGAAGAAAAACTTCAAGATGAGGCTTGCGAATTCGAAAGCCGGAAGGAAAGGAAACCTTAATGTTGCCACAGAGGTGTTTCAAGTGGCGCCTTCTCTTCACATGGTTGAAGTAAGGAAAGCAAAAGGAGATACATTGGAGTTTCATAAGTTCTACAAGAAACTCTCAACAAGTTTGGAGGATGTTGTTTGGAAAACTGATGATGATGATATGACAAAGCAAGAATCAAAAGAAGCAAAGTGA 1338 0.4215 MSQPKVKRRVGIYEIGRTIGEGSFAKVKFARNSKTGEAVAIKIIDKEKVLRHKMSEQIKREVATMKLIKHPNVVRLYEVMGSRTKIYIVLEFVTGGELFDKIVNHGRMGENEARRYFQQLINVVDYCHSRGVYHRDLKPENLLLDCNGDLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLTDRGYDGANADLWSCGVILFVLVAGYLPFDDPNLMELYKKISSADFTCPPWLSFSARKLITRILNPNPTTRITMAEILEDEWFKKDYKPPVFEESGETNLDDVEAVFKDSEEHHVTEKKEEQPTSMNAFELISMSKGLNLENLFDIEQGFKRETRFTSTSSADVIINKIEEAAKPLGFDVQKKNFKMRLANSKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKKLSTSLEDVVWKTDDDDMTKQESKEAK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02829 445 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Vifa1g02829 445 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Vifa1g02829 445 Pfam NAF domain 308 367 IPR004041 GO:0007165
Vifa1g02829 445 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 419 - -
Vifa1g02829 445 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Vifa1g02829 445 CDD STKc_SnRK3 13 267 - -
Vifa1g02829 445 CDD CIPK_C 312 426 - -
Vifa1g02829 445 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02829 445 SUPERFAMILY Protein kinase-like (PK-like) 11 294 IPR011009 -
Vifa1g02829 445 Gene3D Transferase(Phosphotransferase) domain 1 93 275 - -
Vifa1g02829 445 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Vifa1g02829 445 Gene3D Kinase associated domain 1, KA1 305 430 - -
Vifa1g02829 445 FunFam Non-specific serine/threonine protein kinase 305 430 - -
Vifa1g02829 445 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02829 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vifa1g02829 445 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02829 445 FunFam Non-specific serine/threonine protein kinase 6 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02829 Vifa-Chr1 438788497 438791504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02829 5 411 CBL-interacting serine-threonine protein kinases AT2G26980 77.150 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa1g02829 Pkinase 6.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02829 - - gmx:100794566 805.823