Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02823 ATGGTGATGGTGATGATGGTGAAGCTTGTTTTGGTTGTTGTTACTGTTATTGCAATTTTAGTGAATGTGTCATTTGCCTTATACACACCTCATGATAATTACTTAATTGCTTGTGGTTCATCTAAAAGTATTAGCTTTCAAGATCGTGTTTTTGTTCCGGATTCGCAGCATTCTGCATTCGTGTTAAAAACTGGAAATTCGGTTGTTGTTGGTAATTCGAAATCGAGGGTTGTTCCGTCTCCAATTTACGAATCGGCTAGAGTTTTCACTGATAAAGGTGCTTATAGATTTGGAGTTCAACCAGGTAGGCATTGGATTAGGTTATATTTCTATCCTCTTCCAAATGCAAGTCATGATTTGACTTCAGCTTCTGTAACAGTTGTTAGTGATGATTTTGTTCTGTTGAGGAACTTCAGTTTTAGAAACTATAGTGGTTCTTATTTGTTTAGGGAGTATGCTGTTAATGTAACCTCTGATAGTTTGACCGTGACATTCATTCCTTCGAATGGTTCGGTTGCTTTTGTGAATGCAATTGAAGTTGTGTCGATGCCGGATGACTTGTTTGTTGATCAGGCATTGGCGCTTAGTCCGTTGGCGCCTTTTAACGGTCTTTCAGAACTTGCTTTCGAAACTGTTTACCGTTTGAATATAGGAGGTTCCTTGCTAACTGCCGAAAACGACACGTTGGGAAGGACTTGGGAGAATGATCAGAAGTATCTCCATGTGAACAGTTCGGTCACTAATGTATCGACTAGCCCTTCGAGCATTAGGTATCGACCGGGCGTTACTGCTGAGACGGCGCCTAATTGGGTCTATTCGACTGCTGAAGCAATGGGGGATGCAAATGTGGCCAATTCGAATTTCAACATTACTTGGAGTTTTGATGTAGATCCAGATTTCTCCTATTTTGTTCGGCTTCACTTTTGCGATATTATTAGCAAGGCGATGAACACGTTAGTGTTCAGTGTGTTTATAAATACTGATATAGCTATTGGAAGCCTCGATCTATCATCTATGACTAATGATTTGGCTTTGCCTTACTATAAGGATTTTGTTTCTAATGCTTCATCGGATAAGACTTTGACGGTAAGTATCGGTCCTGATACGTTGGCAGACATTACAAATGCAACTATGAATGGATTGGAGATAATGAAAATCAGCAATTCATGGAAGAGCTTGGATGGACTTTCTTCGGTTGTGAGTCTGCTTCCTAGTTCAAAATCTAAAAAGAACAAGATAGGAATAATTATTGGTTCCGCAGCTGGTGCTGTCATTACCTTAGCTTTTGTTGGTTTGTGTTTTTGCTTGTTGGTTAGAAGAAAGTCGAAGTCTCCTCAAGAGGGTGGTCATTCATGGCTGCCATTGCCCTTATATGGAAATTCTCAGACCATGACGAAAATGTCAACAACTTCACAGAAGAGTGGAGGAACTGCAAGCTTCATTTCTTCAACGAATCTTGGACGGTTCTTCACTTTCCAAGAAATCCTAGACGCAACCAACAAATTCGACGAGAAGCTTCTTCTCGGAGTTGGTGGTTTTGGCAGGGTTTATCAAGGAAACCTTGATGATGGTACCAATGTAGCTGTTAAAAGAGGAAATCCTCGATCCGAACAAGGCCTTGCTGAATTCCGAACTGAAATTGAAATGTTATCCAAGCTTCGCCATCGTCATCTTGTGTCTCTAATTGGGTATTGTGATGAGAGGTCAGAAATGATTCTTGTCTATGAATACATGGCTAATGGTCCCCTCAGGAGTCATTTGTATGGAACAGACCTACCACCTCTATCATGGAAACAAAGACTCGAAATTTGCATCGGCGCAGCAAGAGGCCTTCATTATCTCCACACTGGTGCATCACAAAGTATTATTCATCGAGATGTAAAGACAACAAACATTCTTTTAGATGATAGCTTTGTTGCTAAAGTTGCTGACTTCGGCCTCTCCAAAACCGGTCCTGCACTCGATCAAACTCACGTGAGCACGGCCGTTAAAGGTAGTTTTGGTTATCTTGATCCAGAATACTTTAGACGGCAACAACTCACAGAGAAATCCGATGTTTATTCATTCGGAGTAGTTTTAATGGAAGTGCTATGCACAAGACCGGCTTTGAACCCTGTCCTTCCTAGGGAACAGGTTAATATAGCTGAGTGGGCGATGAACTGGCAGAAGAAAGGAATGCTTGATCAAATCATGGATCAACAACTTGTCGGGAAGGTCAATCCTGCTTCGCTTAAGAAGTTTGGGGAGACGGCCGAGAAGTGTTTGGCCGAGTATGGAGTGGATAGACCATCAATGGGAGATGTTCTATGGAATCTCGAATACGCTTTGCAGCTACAAGAAACCTCATCAGCACTCAGGGAACCTGAGGATAACAGCACAAACCACATAACCGGGATTCAGTTGACACCACTCGAGAATTTCGATAACAGTGTGAGTATGATTGATGGAAGCAACTCTGTCACAGACGATGATGGTGAAGACGCTGCTACGAGTGCAGTCTTCTCACAATTGGTAAATCCACGTGGAAGATGA 2532 0.419 MVMVMMVKLVLVVVTVIAILVNVSFALYTPHDNYLIACGSSKSISFQDRVFVPDSQHSAFVLKTGNSVVVGNSKSRVVPSPIYESARVFTDKGAYRFGVQPGRHWIRLYFYPLPNASHDLTSASVTVVSDDFVLLRNFSFRNYSGSYLFREYAVNVTSDSLTVTFIPSNGSVAFVNAIEVVSMPDDLFVDQALALSPLAPFNGLSELAFETVYRLNIGGSLLTAENDTLGRTWENDQKYLHVNSSVTNVSTSPSSIRYRPGVTAETAPNWVYSTAEAMGDANVANSNFNITWSFDVDPDFSYFVRLHFCDIISKAMNTLVFSVFINTDIAIGSLDLSSMTNDLALPYYKDFVSNASSDKTLTVSIGPDTLADITNATMNGLEIMKISNSWKSLDGLSSVVSLLPSSKSKKNKIGIIIGSAAGAVITLAFVGLCFCLLVRRKSKSPQEGGHSWLPLPLYGNSQTMTKMSTTSQKSGGTASFISSTNLGRFFTFQEILDATNKFDEKLLLGVGGFGRVYQGNLDDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDDSFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMNWQKKGMLDQIMDQQLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQETSSALREPEDNSTNHITGIQLTPLENFDNSVSMIDGSNSVTDDDGEDAATSAVFSQLVNPRGR 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02823 843 ProSiteProfiles Protein kinase domain profile. 502 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02823 843 ProSitePatterns Protein kinases ATP-binding region signature. 508 530 IPR017441 GO:0005524
Vifa1g02823 843 FunFam Receptor-like protein kinase FERONIA 208 388 - -
Vifa1g02823 843 SMART serkin_6 502 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02823 843 Gene3D Transferase(Phosphotransferase) domain 1 578 797 - -
Vifa1g02823 843 SUPERFAMILY Protein kinase-like (PK-like) 479 773 IPR011009 -
Vifa1g02823 843 PANTHER OS07G0166700 PROTEIN 488 779 IPR045272 GO:0004714|GO:0006468
Vifa1g02823 843 Pfam Protein tyrosine and serine/threonine kinase 507 768 IPR001245 GO:0004672|GO:0006468
Vifa1g02823 843 Gene3D - 33 184 - -
Vifa1g02823 843 Gene3D - 207 388 - -
Vifa1g02823 843 FunFam receptor-like protein kinase FERONIA 463 577 - -
Vifa1g02823 843 FunFam Putative receptor-like protein kinase 33 184 - -
Vifa1g02823 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Vifa1g02823 843 CDD STKc_IRAK 508 773 - -
Vifa1g02823 843 Pfam Malectin-like domain 36 386 IPR024788 -
Vifa1g02823 843 FunFam Receptor-like protein kinase FERONIA 578 794 - -
Vifa1g02823 843 Gene3D Phosphorylase Kinase; domain 1 460 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02823 Vifa-Chr1 438187945 438190476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02823 11 843 Receptor kinase-like Gene Family AT3G46290 51.712 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa1g02823 Malectin_like 5.2e-42 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02823 - - gmx:100809700 1327