Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02820 ATGGGGTTACTTCATAGGCCAATGTTTTTCAATTTGATCGTATTCATTGGTTATTGTTTTTGTTTTGGTAGAGCAATTGATTGTGGTGGAAATAAAATTGCTCAAACCATTATTGTTGACCAACAAGGAAAAGGAGCATTCACAAAGATTCAACCTGCCATTGATTCTGTTAAGATGAACAATGATCGATGGATTAAGATTCACTTAAATCCAGGAACATATGTAGAAAGTGTTTCTATCCCTGATGGCAAGCCATGCATTATTTTAGAAGGCTCTGATAGAACAACCACGAAAATTACTTATGGTGATAGCAAAGCAACAGTTACATTCTTTTCCAAACCACCTAATATGATTTTTAGCGGTATTACATTTGAGAACACATATGGAACTGAAGGACCTGCAGCAGCTGCTAAATTTAATGGTGATAAAGTAGCTATCTTCAATTGTAATTTTGTAGGTTATCAAGACACTTTATTTGATGCGTCGGGGATTCATTATTATAAGAATTGTTATATTCGAGGTGAAGTTGATTTTATTTGGGGTGAAAGTCGGTCTTATTATGAGAATTGTGTGTTAGATGCAAGACAAAGTAGTTCTAAACCTACAGGTTTTATCACAGCCCAACGTAGAAATTCAGCAAATGATCAAGGTGGTTTTGTTTTTAAAGGAGGGAAAATTACTGGAGTTGGTAAAGTTCTTTTAGGAAGAGCGTATGGTCCTTATTCAAGAGTTGTATTTTGGAATACTGACATTTCTGCGGTGGTACTTCCACTGGGATGGGATCCTTGGCAACAAAAAGGCCATGAAAACAACTTTATTTTTGCGGAAGTTGATTGTACGGGACCAGGATCCAATACTCAAGGGCGTGTCAAGTGGGAGAAGAAACCCAATGAAATAAATATAAATGAATATTCTTTAAAATCTTTCATAAATAAAGATGGATGGCTCAACAACTTACCTCCTATATCTTTGTAA 975 0.3559 MGLLHRPMFFNLIVFIGYCFCFGRAIDCGGNKIAQTIIVDQQGKGAFTKIQPAIDSVKMNNDRWIKIHLNPGTYVESVSIPDGKPCIILEGSDRTTTKITYGDSKATVTFFSKPPNMIFSGITFENTYGTEGPAAAAKFNGDKVAIFNCNFVGYQDTLFDASGIHYYKNCYIRGEVDFIWGESRSYYENCVLDARQSSSKPTGFITAQRRNSANDQGGFVFKGGKITGVGKVLLGRAYGPYSRVVFWNTDISAVVLPLGWDPWQQKGHENNFIFAEVDCTGPGSNTQGRVKWEKKPNEININEYSLKSFINKDGWLNNLPPISL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02820 324 FunFam Pectinesterase 31 320 - -
Vifa1g02820 324 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 33 317 - -
Vifa1g02820 324 Gene3D - 30 320 IPR012334 -
Vifa1g02820 324 Pfam Pectinesterase 37 312 IPR000070 GO:0030599|GO:0042545
Vifa1g02820 324 SUPERFAMILY Pectin lyase-like 33 318 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02820 Vifa-Chr1 437639059 437640430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02820 27 269 Carbohydrate Esterase AT2G19150 45.490 2.52e-67 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02820 - - tpra:123922273 474.552