Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02818 ATGGGGATTCAAACAATGGGTTCTCAAAGTAGTGGGCTACAGTCTCATTTACAGGCTAATCAGTTAGTTAAGCAAAATTCATGGTATGGTCTTACTCTTGACGAGGTTAACAATTTACTCGGAGATTTAGGGAAGCCGTTAGGGAGCATGAATCTCGACGAGCTTCTTCAGAATGTATGGACTGTGGAAGGGAGTAAGGTTGTTGGGATAGAGAGCGAGCACGTTTCGTCTTCGTCGTCTTCTCTTCAACGCCAGGCTAGTATGACGTTGGCTCGTGCTTTGAGTGGGAAGACGGTGGATGATGTATGGCGAGAAATACAGCATGGTCAGAAGAAACAATATGGCGGAGATGAGAAAATTGTGGACAGAGAAATGACTCTTGGTGATACAACGTTGGAGGATTTTTTAGTACAGGCAGGGCTTTTCGCTGGAGCTTCTGATAGTTCGACGGTGGGGTTGGATGCGATGGATACAGTTGTTCCTCAGAGTTTTCAACCGAGAACAGGCTTGTTATCCTCTTCTTCTATTAGTAGTATGTCAGACGCGAAACCAGGTCGCAGAAGGGATAACTCGGATGCATACGAGAAGGCTCTCGAAAGGAGGCTGAAAAGGAAAATCAAGAATAGGGAATCTGCCGCACGGTCACGGGCAAGAAAACAGGCTTACCATAATGAACTGGTTACCAAGGTTACTCGACTAGAAGAATTAAATATACAGCTCAAGAAAGAGAAGGAGTTTGAGCAGAGGCTACCACCTGAACCATCACCTGAACCAAGATGTCGTCTTCGAAGAATAAGTTCCGCCCTTTTCTGA 813 0.4551 MGIQTMGSQSSGLQSHLQANQLVKQNSWYGLTLDEVNNLLGDLGKPLGSMNLDELLQNVWTVEGSKVVGIESEHVSSSSSSLQRQASMTLARALSGKTVDDVWREIQHGQKKQYGGDEKIVDREMTLGDTTLEDFLVQAGLFAGASDSSTVGLDAMDTVVPQSFQPRTGLLSSSSISSMSDAKPGRRRDNSDAYEKALERRLKRKIKNRESAARSRARKQAYHNELVTKVTRLEELNIQLKKEKEFEQRLPPEPSPEPRCRLRRISSALF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02818 270 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 243 IPR004827 GO:0003700|GO:0006355
Vifa1g02818 270 CDD bZIP_plant_BZIP46 200 254 - -
Vifa1g02818 270 Coils Coil 223 250 - -
Vifa1g02818 270 MobiDBLite consensus disorder prediction 165 194 - -
Vifa1g02818 270 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700|GO:0006355
Vifa1g02818 270 Pfam bZIP transcription factor 200 244 IPR004827 GO:0003700|GO:0006355
Vifa1g02818 270 SMART brlzneu 196 268 IPR004827 GO:0003700|GO:0006355
Vifa1g02818 270 SUPERFAMILY Leucine zipper domain 200 247 IPR046347 GO:0003700|GO:0006355
Vifa1g02818 270 MobiDBLite consensus disorder prediction 165 181 - -
Vifa1g02818 270 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 24 266 IPR043452 GO:0003700|GO:0045893
Vifa1g02818 270 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 198 250 - -
Vifa1g02818 270 Gene3D - 198 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02818 Vifa-Chr1 437521388 437522436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02818 12 270 bZIP Transcription Factor Family AT3G56850 43.581 1.48e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g02818 bZIP_1 1.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02818 K14432 - gmx:100798549 358.221