Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02816 ATGAACGGAAAGGCCAACGTTACCAAAGAGCTTAACGCTAAACACAAGAAGATACTGGAAGGACTGCTCAAATTACCTGAGAATCGGGAATGTGCTGACTGCAAATCTAAAGCTCCGAGATGGGCCAGTGTAAATCTTGGCATCTTTATATGCATGCAATGTTCAGGAATACATAGAAGTTTGGGAGTACATATATCAAAGGTTCGTTCTGCAACTCTCGACACTTGGCTTCCAGAGCAAGTCACATTCATTCATTCAATGGGAAACGATAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAACTACGACAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTCCAAGGGATGGGAATCAAAGAACTCCTTCTGAACTACGGGAAGATAAATCTCCTTCACAATGGCCGAGGCCTGCAGAAAAAAGTGGACTTCAATATGCCACTGTTCCTGAAAATACTTTTGAGGAAAGGAAGAAAAACCAACCATCAAATGCAGTTCCTGCTACAAGACGTAGGGTTCCTGCTCCTCGCAAAGTACCGGAGCAGGTAACTCCGGCTCCCCAACCTCAGGACACTGAGAAAGTGAAACCAGTACCCCCGCAACAACAAACTGTAACTTCAAAGCCGACTATAGACATAGCTCAAAGTACCCCTCCCAAAGTAGACTATGCTACAGACCTTTTCAACATGTTGTCCATGGATGATGCAAATGAAAATAGCTCCAAAGTAGCTGGTGCTACTGCTGATGATAATAATTGGGCAGGCTTTCAGTCTGCTGCAGAGGTGTCAACAGCTGAGAAAACTGGTCCACCTAATGCAGTCGAGAGTACTTCTCAGTCTGCACCTGGAATTGAGGATCTATTTAAAGATTCCTTTTCTGTGACACCAAGTTTAGCTCCAGCAAAACCACAAAAAGATGTGAAAAATGATATACTGAGCCTCTTTGAGAAGAGCAACATTGTATCTCCATTTGCAATGCATCAACAACAGCTTGCCATGCTAGCACAACAGCAGTCTCTTCTAATGGCTGCTGCATCTAAATCTAATGATATCGATCTCAAGTATCCTACTGGCATACAACAAGCAAGTTCCAATGTCTCTGTCCAAAATTGGCAACATACTGGATTCCCAATATCTGGAGTAATGCCCATGGGTGCTCAGGGAGAGCTGCAGAAACTTATGCATACTAGGAACGTGACTCCAGCACATCCAGCTGGAAACTCTGTTCAACATCCACCATCTGGTTTCTATGCTATGGGGCAAGTTGGTCCAGTCAATGGTAAACCTCAGTCAAGTCCAGTTCCGTCAACCACTTCCAAGTCTGCCAAGGAATATGATTTTTCCTCCTTAACACAAGGAATGTTTGCGAAACAATGA 1404 0.4352 MNGKANVTKELNAKHKKILEGLLKLPENRECADCKSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVTFIHSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNQRTPSELREDKSPSQWPRPAEKSGLQYATVPENTFEERKKNQPSNAVPATRRRVPAPRKVPEQVTPAPQPQDTEKVKPVPPQQQTVTSKPTIDIAQSTPPKVDYATDLFNMLSMDDANENSSKVAGATADDNNWAGFQSAAEVSTAEKTGPPNAVESTSQSAPGIEDLFKDSFSVTPSLAPAKPQKDVKNDILSLFEKSNIVSPFAMHQQQLAMLAQQQSLLMAAASKSNDIDLKYPTGIQQASSNVSVQNWQHTGFPISGVMPMGAQGELQKLMHTRNVTPAHPAGNSVQHPPSGFYAMGQVGPVNGKPQSSPVPSTTSKSAKEYDFSSLTQGMFAKQ 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02816 467 CDD ArfGap 19 117 - -
Vifa1g02816 467 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 467 IPR044520 GO:0005096
Vifa1g02816 467 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vifa1g02816 467 MobiDBLite consensus disorder prediction 124 144 - -
Vifa1g02816 467 MobiDBLite consensus disorder prediction 434 467 - -
Vifa1g02816 467 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vifa1g02816 467 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Vifa1g02816 467 MobiDBLite consensus disorder prediction 124 226 - -
Vifa1g02816 467 MobiDBLite consensus disorder prediction 430 467 - -
Vifa1g02816 467 MobiDBLite consensus disorder prediction 194 223 - -
Vifa1g02816 467 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vifa1g02816 467 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vifa1g02816 467 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vifa1g02816 467 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vifa1g02816 467 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vifa1g02816 467 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02816 Vifa-Chr1 437354198 437359680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02816 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 4.97e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02816 K12486 - gmx:100789910 652.899