Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02815 ATGAACGGAAAGGCCAACGTTACCAAAGAGCTTAACGCTAAACACAAGAAGATACTGGAAGGACTGCTCAAATTACCTGAGAATCGGGAATATCTCATAGCTCCGAGATGGGCCAGTGTAAATCTTGGCATCTTTATATGCATGCAATGTTCAGGAATACATAGAAGTTTGGGAGTACATATATCAAAGGTTCGTTCTGCAACTCTTGACACTTGGCTTCCAGAGCAAGTCACATTCATTCATTCAATGGGAAACGATAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAACTACGACAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTCCAAGGGATGGGAATCAAAGAATACCTTCTGAACTACGGGAAGATAAATCTCCTTCACAATGGCCGAGGCCTGCAGAAAAAACTGGACTTCAATACGCCACTGTTCCTGAAAATACTTTTGAGGAAAGGATGAAAAACCAACCATCAAATGCAGTTCCTGCTACAAGACGTAGGGTTCCTGCTCCTCGCAAAGTACCGGAGCAGGTAACTCCGGCTCCCCAACCTCAGGACACTGAGAAAGTGAAACCAGTACCCCCGCAACAACAAACTGTAACTTCAAAGCCGACTATAGACATAGCTCAAAGTACCCCTCCCAAAGTAGACTATGCTACAGACCTTTTCAACATGTTGTCCATGGATGATGCAAATGAAAATAGCTCCAAAGTAGCTGGTGCTACTGCTGATGATAATAATTGGGCAGGCTTTCAGTCTGCTGCAGAGGTGTCAACAGCCGAGAAAACTGGTCCACCTAACGCAGTTGAGAGTACTTCTCAGTCTGCACCTGGAATTGAGGATCTATTTAAAGATTCCTTTTCTGTGACACCAAGTTTAGCTCCAGCAAAACCACAAAAAGATGTGAAAAATGATATACTGAGCCTCTTTGAGAAGAGCAACATTGTATCTCCATTTGCAATGCATCAACAACAGCTTGCCATGCTAGCACAACAGCAGTCTCTTCTAATGGCTGCTGCATCTAAATCTAATGATATCAATCTCAAGTATCCTACTGGCATACAACAAGCAAGTTCCAATGTCTCTGTCCAAAATTGGCAAAATACTGGATTCCCAATATCTGGAGTAATGCCCATGGGTTCTCAGGGAGAGCTGCAGAAACTTATGCATACTAGGAACATGACTCCAGCACATCCAGCTGGAAACTCTGTTCAACATCCACCATCTGGTTTCTATGCTATGGGGCAAGTTGGTCCAGTCAATGGTAAGATGACAACGGGAGTGAGTAAACCTCAGTCAAGTCCAGTTCCGTCAACCACTTCCAAGTCTGCCAAGGAATATGATTTTTCCTCCTTAACACAAGGAATGTTTGCGAAACAATGA 1413 0.4324 MNGKANVTKELNAKHKKILEGLLKLPENREYLIAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVTFIHSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNQRIPSELREDKSPSQWPRPAEKTGLQYATVPENTFEERMKNQPSNAVPATRRRVPAPRKVPEQVTPAPQPQDTEKVKPVPPQQQTVTSKPTIDIAQSTPPKVDYATDLFNMLSMDDANENSSKVAGATADDNNWAGFQSAAEVSTAEKTGPPNAVESTSQSAPGIEDLFKDSFSVTPSLAPAKPQKDVKNDILSLFEKSNIVSPFAMHQQQLAMLAQQQSLLMAAASKSNDINLKYPTGIQQASSNVSVQNWQNTGFPISGVMPMGSQGELQKLMHTRNMTPAHPAGNSVQHPPSGFYAMGQVGPVNGKMTTGVSKPQSSPVPSTTSKSAKEYDFSSLTQGMFAKQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02815 470 MobiDBLite consensus disorder prediction 160 222 - -
Vifa1g02815 470 FunFam stromal membrane-associated protein 1 isoform X1 1 124 - -
Vifa1g02815 470 Pfam Putative GTPase activating protein for Arf 34 119 IPR001164 GO:0005096
Vifa1g02815 470 Gene3D Arf GTPase activating protein 2 126 IPR038508 -
Vifa1g02815 470 SUPERFAMILY ArfGap/RecO-like zinc finger 15 120 IPR037278 -
Vifa1g02815 470 MobiDBLite consensus disorder prediction 190 219 - -
Vifa1g02815 470 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 470 IPR044520 GO:0005096
Vifa1g02815 470 ProSiteProfiles ARF GTPase-activating proteins domain profile. 35 126 IPR001164 GO:0005096
Vifa1g02815 470 SMART arf_gap_3 16 126 IPR001164 GO:0005096
Vifa1g02815 470 CDD ArfGap 19 113 - -
Vifa1g02815 470 MobiDBLite consensus disorder prediction 432 470 - -
Vifa1g02815 470 PRINTS HIV Rev interacting protein signature 64 85 IPR001164 GO:0005096
Vifa1g02815 470 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vifa1g02815 470 MobiDBLite consensus disorder prediction 124 140 - -
Vifa1g02815 470 MobiDBLite consensus disorder prediction 124 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02815 Vifa-Chr1 437331405 437336986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02815 16 119 C2H2 Transcription Factor Family AT4G05330 44.828 9.75e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02815 K12486 - gmx:100789910 634.795