Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02807 ATGGTCCGCCAGTCTCAGAGTATACTCAAAGGAAGATTTTTACAGTTTGGGGAAGTTGAAGATGGTCCTTTGGGTCTTGATAAGAATACTGGAAGGCCAAAGGGGTTTGCTCTGTTTGTTTACAAGTCTGTTGAGAGTTCTAAGAAGGCTTTGGAAGAGCCTAATAAGACTTTTGAGGGTCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGATACAGGGGTCATTATCAGCAGCCTCAACACCATCATCAACAGCATCATTCTCACCATCACCATCACCAGCCTCATTACAATTCGAGGAAAGAGAAGAACAAGTATTCCTCTGGTGGTGGGCCATCCCATGGTGGAGGTGGTGGTCACTTGATGGCGCCTCCGGGGCCTGTTGGGGGTTATAATCCTGGAGTCCCAGCTCAAGGATTGAATCCAGCACTTGGTCAGGCGTTGTCAGCTTTGCTTGCTAATCAAGGAGCTGGATTGGGGCTTGGAAACTTGCTTGGAGGTCTTGGTGGTGCTTCTGTGAACCAAGCCGGGCCACCTCCTGCTGCGTATGGTAATCAGGCTCCTACGGGATATGGAAACCAGCCGGGGTTGCAACAACTGTACCAGAATCCTCAGTTGGGGCAGAGTGGTGGTGCTAGACCTCATCCTGGCCCTGGTGGCGCTCCTTACATGGGTCACTAG 690 0.5029 MVRQSQSILKGRFLQFGEVEDGPLGLDKNTGRPKGFALFVYKSVESSKKALEEPNKTFEGHTLYCQKAVDGPKGYRGHYQQPQHHHQQHHSHHHHHQPHYNSRKEKNKYSSGGGPSHGGGGGHLMAPPGPVGGYNPGVPAQGLNPALGQALSALLANQGAGLGLGNLLGGLGGASVNQAGPPPAAYGNQAPTGYGNQPGLQQLYQNPQLGQSGGARPHPGPGGAPYMGH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02807 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 63 IPR000504 GO:0003723
Vifa1g02807 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 70 IPR000504 GO:0003723
Vifa1g02807 229 MobiDBLite consensus disorder prediction 69 137 - -
Vifa1g02807 229 MobiDBLite consensus disorder prediction 182 229 - -
Vifa1g02807 229 Gene3D - 5 124 IPR012677 -
Vifa1g02807 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 5 90 - -
Vifa1g02807 229 MobiDBLite consensus disorder prediction 190 212 - -
Vifa1g02807 229 MobiDBLite consensus disorder prediction 79 102 - -
Vifa1g02807 229 SUPERFAMILY RNA-binding domain, RBD 6 89 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02807 Vifa-Chr1 436459550 436460292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02807 5 72 C2H2 Transcription Factor Family AT2G19380 32.353 6.28e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02807 K12741 - gmx:100792637 260.766