Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02803 ATGGGTTCACAAGAAAATGAGGAATGTTTGCCCCCTCCACCTCCCATTGTTCCGTCTGATGTTGAACCTGTCAAGATAGAACCAGAGCTGGTTAAGAAGAAGGGTCCTATTAGGGTTCCAATGGCTCGGCGCGGACTCGGGTCAAAGGGTACTAGGTTGTCTTTGCTGACCAATCACTTTAAAGTGAATGTTGCCAGCACTGATGGATATTTCTTCCAGTACAGTGTTGCTCTTTTTTATGAAGACGGACGTCCTGTTGAGGGGAAGGGCTCTGGTAGGAAGATACTGGACCGAGTTCAAGAAACTTATAATTCTGAGCTGAATGGGAAAGACCTTGCTTACGATGGTGAAAAAACACTGTTCACCATTGGCTCTCTAGCTCAGAACAAGCTTGAGTTTACTGTTGTTCTAGAAGATGTAACATCTAACAGGAATAATGGTAACCGGAGCCCTGAAGCGAATGGTAGTCCTAATGATGCTGATAGGAAGAGGGTCCGAAAATCCTTCCGTTCCAAGACATATAAAGTTGAAATCAGCTTTGCCTCCAAAATTCCTCTGCAGGCTATTGCCAATGCCTTAAGGGGGAATGAGACCGAGAATTATCAAGAAGCCATTAGGGTGCTTGATATTATACTGAGGCAACATGCTGCCAAACAAGGCTGTCTTCTTGTTCGCCAAAATTTCTTCCACAATGATGCTAAGAATTTCACAGATGTGGGAGGTGGTGTACTTGGGGTCAGAGGGCTGCATTCCAGCTTTAGAACAACTCAAAGTGGACTTTCTCTTAACATAGATGTGTCCACAACTATGATTGTTCGTCCTGGGCCTGTTGTGGACTTCTTGATTGCAAATCAAAACGCGAGGGATCCCTTCACTCTTGATTGGGCTAAGGCCAAAAGGACTCTGAAAAATTTAAGGATCAAAACCAGCCCTTCAAATCAGGAGTACAAGATTACTGGGTTGAGTGACTTGCCATGCAGGGAACAGTTGTTCACTCTGAAGAAGAGAGGGGGTGGAGAAGATGAGTCAGAGGAGATCACTGTTTATGATTATTTTGTCAACCGACGGAATATTACTCTGCAGTACTCTGCTGACCTTCCGTGTATTAATGTTGGGAAGCCCAAACGACCTACTTATGTCCCAATTGAGCTTTGCGATTTGGTTTCCCTTCAACGGTACACAAAAGCCCTATCCACTCTCCAACGGTCATCTCTTGTTGAAAAGTCGAGGCAGAAGCCCCAAGAGCGGATGAAGGTTTTGTCTGACGCGCTGAGAACCAGTAACTACGGTTCTGAACCCATGCTGAAAAACTGTGGCATTTCTATAACTTCTGGGTTCACACAAGTGGATGGCAGAGTTTTGCAAGCACCAAGGCTGAAGTTTGGAAATGGTGAAGATTTCAATCCAAGAAACGGGAGATGGAATTTCAATAATAAGAAAATTGTGCAACCAGTCAAGATAAAAAAGTGGGCTGTGGTCAACTTTTCTGCTCGTTGCGATGTGCGAGGACTTGTGAGGGATCTGATTAAATGTGGAGGAATGAAAGGAATTCAAGTTGAACCTCCTTTCGATGTGTATGAAGAGCAAGGTCATTTAAGGCGGTCACCACCTCTTGTACGTGTTGAGAAAATGTTTGAGAACGTTCAGTCCAAACTTCCCGAGCCTCCTCAATTTCTCCTCTGCCTGCTTCCTGATAGGAAGAACTCTGAACTTTATGGTCCATGGAAGAAAAAGAATCTTGCTGAGTTTGGAATTGTTACCCAGTGCATAGCGCCCTCTAGGGTAAACGACCAGTACCTGACCAATGTTTTACTGAAGATCAATGCTAAGCTTGGTGGGATGAATTCTCTGTTAGGGGTTGAACATTCTCCATCCATCCCAATTGTATCTAAAGCTCCTACTCTAATTTTGGGCATGGACGTTTCTCATGGTTCCCCTGGGCAATCGGACATTCCATCAATTGCTGCTGTTGTGAGTTCGAGACAATGGCCCCTAATATCTAAATATAGGGCATGTGTCCGAACCCAGGGTTCAAAGGTTGAAATGATTGACAATTTGTTCAAGCCAGTGCCTGGAACGAAGGATGATGAAGGAATTATAAGGGAACTCCTGATTGATTTCTACAATAGTTCCGGGGGCAGAAAACCTGACAATATTATCATTTTCAGGGATGGTGTCAGTGAGTCTCAGTTCAACCAAGTCTTGAACATTGAGCTCGGAAATATTATTGAGGCCTGTAAATATCTTGATGATGAATGGAACCCCAAGTTTACTGTTATTGTTGCTCAGAAGAATCACCACACTAAATTCTTCCAACCCGGAGCTCCAGACAATGTGCCGGCTGGGACTGTTGTGGACAACAAAATTTGTCATCCCAGGAATTATGATTTCTATATGTGTGCTCATGCGGGAATGATTGGGACCAGTAGGCCAACACATTATCATGTTTTGTTGGATGAGATTGGTTTTTCTGCCGATGATCTTCAGGAGCTTGTGCACTCTCTATCCTATGTTTATCAGAGAAGTACTACTGCCATATCTGTTGTTGCTCCAATCTGCTATGCTCACTTGGCTGCTTCTCAAGTTGGACAGTTCATGAAGTTTGAGGACAGATCTGAAACAGCATCCGTTCCCGGTGGAATAAACGGATCTCCTGTCCCACAGCTTCCAAAGTTACGAGAGAGTGTCTGCAATTCTATGTTTTTTGTTTGA 2712 0.441 MGSQENEECLPPPPPIVPSDVEPVKIEPELVKKKGPIRVPMARRGLGSKGTRLSLLTNHFKVNVASTDGYFFQYSVALFYEDGRPVEGKGSGRKILDRVQETYNSELNGKDLAYDGEKTLFTIGSLAQNKLEFTVVLEDVTSNRNNGNRSPEANGSPNDADRKRVRKSFRSKTYKVEISFASKIPLQAIANALRGNETENYQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDAKNFTDVGGGVLGVRGLHSSFRTTQSGLSLNIDVSTTMIVRPGPVVDFLIANQNARDPFTLDWAKAKRTLKNLRIKTSPSNQEYKITGLSDLPCREQLFTLKKRGGGEDESEEITVYDYFVNRRNITLQYSADLPCINVGKPKRPTYVPIELCDLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLSDALRTSNYGSEPMLKNCGISITSGFTQVDGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVQPVKIKKWAVVNFSARCDVRGLVRDLIKCGGMKGIQVEPPFDVYEEQGHLRRSPPLVRVEKMFENVQSKLPEPPQFLLCLLPDRKNSELYGPWKKKNLAEFGIVTQCIAPSRVNDQYLTNVLLKINAKLGGMNSLLGVEHSPSIPIVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQGSKVEMIDNLFKPVPGTKDDEGIIRELLIDFYNSSGGRKPDNIIIFRDGVSESQFNQVLNIELGNIIEACKYLDDEWNPKFTVIVAQKNHHTKFFQPGAPDNVPAGTVVDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDRSETASVPGGINGSPVPQLPKLRESVCNSMFFV 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02803 903 FunFam Protein argonaute 7 269 393 - -
Vifa1g02803 903 SUPERFAMILY PAZ domain 269 429 IPR036085 GO:0005515
Vifa1g02803 903 Pfam N-terminal domain of argonaute 53 212 IPR032474 -
Vifa1g02803 903 Pfam Argonaute linker 2 domain 415 461 IPR032472 -
Vifa1g02803 903 SMART Piwi_a_2 558 867 IPR003165 GO:0003676
Vifa1g02803 903 Pfam PAZ domain 278 405 IPR003100 GO:0005515
Vifa1g02803 903 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 36 869 - -
Vifa1g02803 903 Pfam Mid domain of argonaute 468 520 IPR032473 -
Vifa1g02803 903 Gene3D - 453 619 - -
Vifa1g02803 903 Pfam Argonaute linker 1 domain 224 272 IPR014811 -
Vifa1g02803 903 ProSiteProfiles Piwi domain profile. 558 867 IPR003165 GO:0003676
Vifa1g02803 903 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g02803 903 CDD Piwi_ago-like 433 859 IPR045246 -
Vifa1g02803 903 ProSiteProfiles PAZ domain profile. 299 389 IPR003100 GO:0005515
Vifa1g02803 903 Pfam Piwi domain 559 867 IPR003165 GO:0003676
Vifa1g02803 903 SUPERFAMILY Ribonuclease H-like 542 865 IPR012337 -
Vifa1g02803 903 CDD PAZ_argonaute_like 274 388 - -
Vifa1g02803 903 Gene3D - 625 903 IPR036397 GO:0003676
Vifa1g02803 903 SMART DUF1785_2 222 274 IPR014811 -
Vifa1g02803 903 FunFam Protein argonaute 3 626 903 - -
Vifa1g02803 903 Gene3D paz domain 268 393 - -
Vifa1g02803 903 MobiDBLite consensus disorder prediction 142 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02803 Vifa-Chr1 435857652 435863290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02803 43 902 Eukaryotic Initiation Factors Gene Family AT5G43810 35.730 3.39e-162 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02803 K11593 - gmx:100779439 1514.21