Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02802 ATGGGTTCACAAGAAAATGAGGAATGTTTGCCCCCTCCACCTCCCATTGTTCCGTCTGATGTTGAACCTGTCAAGATAGAACCAGAGCTGGTTAAGAAGAAGGGTCCTATTAGGGTTCCAATGGCTCGGCGCGGACTCGGGTCAAAGGGTACTAGGTTGTCTTTGCTGACCAATCACTTTAAAGTGAATGTTGCCAGCACTGATGGATATTTCTTCCAGTACAGTGTTGCTCTTTTTTATGAAGACGGACGTCCTGTTGAGGGGAAGGGCTCTGGTAGGAAGATACTGGACCGAGTTCAAGAAACTTATAATTCTGAGCTGAATGGGAAAGACCTTGCTTACGATGGTGAAAAAACACTGTTCACCATTGGCTCTCTAGCTCAGAACAAGCTTGAGTTTACTGTTGTTCTAGAAGATGTAACATCTAACAGGTTGAAGAATAATGGTAACCGGAGCCCTGAAGCGAATGGTAGTCCTAATGATGCTGATAGGAAGAGGGTCCGAAAATCCTTCCGTTCCAAGACATATAAAGTTGAAATCAGCTTTGCCTCCAAAATTCCTCTGCAGGCTATTGCCAATGCCTTAAGGGGGAATGAGACCGAGAATTATCAAGAAGCCATTAGGGTGCTTGATATTATACTGAGGCAACATGCTGCCAAACAAGGCTGTCTTCTTGTTCGCCAAAATTTCTTCCACAATGATGCTAAGAATTTCACAGATGTGGGAGGTGGTGTACTTGGGGTCAGAGGGCTGCATTCCAGCTTTAGAACAACTCAAAGTGGACTTTCTCTTAACATAGATGTGTCCACAACTATGATTGTTCGTCCTGGGCCTGTTGTGGACTTCTTGATTGCAAATCAAAACGCGAGGGATCCCTTCACTCTTGATTGGGCTAAGGCCAAAAGGACTCTGAAAAATTTAAGGATCAAAACCAGCCCTTCAAATCAGGAGTACAAGATTACTGGGTTGAGTGACTTGCCATGCAGGGAACAGTTGTTCACTCTGAAGAAGAGAGGGGGTGGAGAAGATGAGTCAGAGGAGATCACTGTTTATGATTATTTTGTCAACCGACGGAATATTACTCTGCAGTACTCTGCTGACCTTCCGTGTATTAATGTTGGGAAGCCCAAACGACCTACTTATGTCCCAATTGAGCTTTGCGATTTGGTTTCCCTTCAACGGTACACAAAAGCCCTATCCACTCTCCAACGGTCATCTCTTGTTGAAAAGTCGAGGCAGAAGCCCCAAGAGCGGATGAAGGTTTTGTCTGACGCGCTGAGAACCAGTAACTACGGTTCTGAACCCATGCTGAAAAACTGTGGCATTTCTATAACTTCTGGGTTCACACAAGTGGATGGCAGAGTTTTGCAAGCACCAAGGCTGAAGTTTGGAAATGGTGAAGATTTCAATCCAAGAAACGGGAGATGGAATTTCAATAATAAGAAAATTGTGCAACCAGTCAAGATAAAAAAGTGGGCTGTGGTCAACTTTTCTGCTCGTTGCGATGTGCGAGGACTTGTGAGGGATCTGATTAAATGTGGAGGAATGAAAGGAATTCAAGTTGAACCTCCTTTCGATGTGTATGAAGAGCAAGGTCATTTAAGGCGGTCACCACCTCTTGTACGTGTTGAGAAAATGTTTGAGAACGTTCAGTCCAAACTTCCCGAGCCTCCTCAATTTCTCCTCTGCCTGCTTCCTGATAGGAAGAACTCTGAACTTTATGGTCCATGGAAGAAAAAGAATCTTGCTGAGTTTGGAATTGTTACCCAGTGCATAGCGCCCTCTAGGGTAAACGACCAGTACCTGACCAATGTTTTACTGAAGATCAATGCTAAGCTTGGTGGGATGAATTCTCTGTTAGGGGTTGAACATTCTCCATCCATCCCAATTGTATCTAAAGCTCCTACTCTAATTTTGGGCATGGACGTTTCTCATGGTTCCCCTGGGCAATCGGACATTCCATCAATTGCTGCTGTTGTGAGTTCGAGACAATGGCCCCTAATATCTAAATATAGGGCATGTGTCCGAACCCAGGGTTCAAAGGTTGAAATGATTGACAATTTGTTCAAGCCAGTGCCTGGAACGAAGGATGATGAAGGAATTATAAGGGAACTCCTGATTGATTTCTACAATAGTTCCGGGGGCAGAAAACCTGACAATATTATCATTTTCAGGGATGGTGTCAGTGAGTCTCAGTTCAACCAAGTCTTGAACATTGAGCTCGGAAATATTATTGAGGCCTGTAAATATCTTGATGATGAATGGAACCCCAAGTTTACTGTTATTGTTGCTCAGAAGAATCACCACACTAAATTCTTCCAACCCGGAGCTCCAGACAATGTGCCGGCTGGGACTGTTGTGGACAACAAAATTTGTCATCCCAGGAATTATGATTTCTATATGTGTGCTCATGCGGGAATGATTGGGACCAGTAGGCCAACACATTATCATGTTTTGTTGGATGAGATTGGTTTTTCTGCCGATGATCTTCAGGAGCTTGTGCACTCTCTATCCTATGTTTATCAGAGAAGTACTACTGCCATATCTGTTGTTGCTCCAATCTGCTATGCTCACTTGGCTGCTTCTCAAGTTGGACAGTTCATGAAGTTTGAGGACAGATCTGAAACAGCATCCGTTCCCGGTGGAATAAACGGATCTCCTGTCCCACAGCTTCCAAAGTTACGAGAGAGTGTCTGCAATTCTATGTTTTTTGTTTGA 2718 0.4408 MGSQENEECLPPPPPIVPSDVEPVKIEPELVKKKGPIRVPMARRGLGSKGTRLSLLTNHFKVNVASTDGYFFQYSVALFYEDGRPVEGKGSGRKILDRVQETYNSELNGKDLAYDGEKTLFTIGSLAQNKLEFTVVLEDVTSNRLKNNGNRSPEANGSPNDADRKRVRKSFRSKTYKVEISFASKIPLQAIANALRGNETENYQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDAKNFTDVGGGVLGVRGLHSSFRTTQSGLSLNIDVSTTMIVRPGPVVDFLIANQNARDPFTLDWAKAKRTLKNLRIKTSPSNQEYKITGLSDLPCREQLFTLKKRGGGEDESEEITVYDYFVNRRNITLQYSADLPCINVGKPKRPTYVPIELCDLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLSDALRTSNYGSEPMLKNCGISITSGFTQVDGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVQPVKIKKWAVVNFSARCDVRGLVRDLIKCGGMKGIQVEPPFDVYEEQGHLRRSPPLVRVEKMFENVQSKLPEPPQFLLCLLPDRKNSELYGPWKKKNLAEFGIVTQCIAPSRVNDQYLTNVLLKINAKLGGMNSLLGVEHSPSIPIVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQGSKVEMIDNLFKPVPGTKDDEGIIRELLIDFYNSSGGRKPDNIIIFRDGVSESQFNQVLNIELGNIIEACKYLDDEWNPKFTVIVAQKNHHTKFFQPGAPDNVPAGTVVDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDRSETASVPGGINGSPVPQLPKLRESVCNSMFFV 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02802 905 ProSiteProfiles Piwi domain profile. 560 869 IPR003165 GO:0003676
Vifa1g02802 905 CDD Piwi_ago-like 435 861 IPR045246 -
Vifa1g02802 905 FunFam Protein argonaute 7 271 395 - -
Vifa1g02802 905 ProSiteProfiles PAZ domain profile. 301 391 IPR003100 GO:0005515
Vifa1g02802 905 SUPERFAMILY PAZ domain 271 431 IPR036085 GO:0005515
Vifa1g02802 905 Pfam Piwi domain 561 869 IPR003165 GO:0003676
Vifa1g02802 905 CDD PAZ_argonaute_like 276 390 - -
Vifa1g02802 905 Pfam Argonaute linker 2 domain 417 463 IPR032472 -
Vifa1g02802 905 Pfam Mid domain of argonaute 470 522 IPR032473 -
Vifa1g02802 905 SMART Piwi_a_2 560 869 IPR003165 GO:0003676
Vifa1g02802 905 MobiDBLite consensus disorder prediction 144 167 - -
Vifa1g02802 905 Gene3D - 455 621 - -
Vifa1g02802 905 FunFam Protein argonaute 3 628 905 - -
Vifa1g02802 905 Pfam Argonaute linker 1 domain 226 274 IPR014811 -
Vifa1g02802 905 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g02802 905 Pfam PAZ domain 280 407 IPR003100 GO:0005515
Vifa1g02802 905 Pfam N-terminal domain of argonaute 53 214 IPR032474 -
Vifa1g02802 905 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 36 871 - -
Vifa1g02802 905 SUPERFAMILY Ribonuclease H-like 544 867 IPR012337 -
Vifa1g02802 905 Gene3D paz domain 270 395 - -
Vifa1g02802 905 Gene3D - 627 905 IPR036397 GO:0003676
Vifa1g02802 905 SMART DUF1785_2 224 276 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02802 Vifa-Chr1 435857652 435863290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02802 43 904 Eukaryotic Initiation Factors Gene Family AT5G43810 35.651 7.79e-162 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02802 K11593 - gmx:100779439 1509.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02802 1 435857652 435863290 Vifa1g02802 1 435857652 435863290 ECH