Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02798 ATGATGTTATCAGCTTCACCATCTTCTCTAGCGAGAAGCTCTTTGGAAGAGATGCTTGAATCTCTTCGGCTGAGAGATGAAAGTGAGAAGCCGAAAGACCTACCTCCAGCATTGCCAGCTAGGCCGATGTCGAGAGGTAGGTTGCCTCCGGCGAGAAGGTCTTTGCCGAAAAGCTTTAAGGTGGATGGAGATGGTAATAAGGAAATGGGGCATAAGAGGAAAGGGAGTTTTGGGAACAAGAAGTTGATGCTGGATGTTGAATCTCCTTATGTGTTTGTTTCTGAAGAGAATTGTGTTAGTGAACATCCTTCACCTGTTCCCGTTTCTTCCATTACAGTTGATGATTCTTCTGTTGCTTCTGTGCCTCCTCCTTCGCTGGAATTGGAGGAGAATGACAATGTTTCTTATTTCATCAAAAAGAAACTTCATGTTTGGTGTAGGCAACCAAAAGGGAAGTGGGGTCTGGGAAGAATACAGTCAACTTCCGGAGAACAAGCATCGGTTTCACTCTCAAATGGAAATATTATGAAAGTGGCTAGAACAGATCTCCTACCGGCTAATCCTGATATTTTAGAGGGTGTGGACGATCTTATACAGCTCAGCTATTTGAACGAGCCTTCGGTTCTTCACAATCTTCAGTTTAGATATTCTCAAGATATGATATATAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCCTTCAAAGATGTACAGATTTACGGAAACGAGTATGTCTCTGCTTATAGAGATAAGTCTCTTGATAGTCCTCACGTTTATGCCATGGTAGATTCAGCTTATAATGAGATGATAGGAGATGAAGTAAATCAGTCCATTATCATAAGTGGCGAGAGTGGAGCTGGGAAAACAGAAACAGCGAAAATTGCGATGCAATACTTAGCTGCTCTTGGTGGTGGAAGTTGTGGGATAGAAAATGAAGTTCTTCAGACAAATGTTATACTAGAAGCTTTTGGCAATGCAAAAACATCTAAGAATGACAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTCAGCGCAACAGGAAAAATGTGTGGGGCTAAAATTCAAACCTTTCTATTAGAAAAGTCAAGAGTTGTTCAACTGGCTGATGGCGAGAGATCTTATCACATATTTTATCAACTTTGTGCTGGATCTTCACCTGATATTAAAGCGAGACTAAATCTTAGAGCGGCCAGCGAATATAAATATCTAAATCAGAGTGACTGCATGACAATTGATGGGGTTGATGACGCGAAAAAGTTTCATAGGCTGAAGAAAGCATTGGATGTCGTTCAAATGTGCAAAGAGGATCAAGAGCGAGCCTTTAAAATGCTTGCTGCGGTATTGTGGCTGGGAAATATATCATTCCAAGATAATGATAATGATAATAATCACATTGAAGTGGCGAACGATGAAGCTGTAAGCAATGCTGCTTCCTTAATGGGTTGCAGTTCTCACGAGCTAATAACAGTATTATCTACACATAAAATTCAAGCTGGCAAGGATACTATCACTAAAACACTGACATTACGACAGGCAATTGATGCAAGAGATGCATTAGCAAAATTCATCTATGCCAGCTTATTTGACTGGCTTGTAGAACAAGTTAACAAGTCACTTGAAGTTGGTAAACGCCGAACTGGGAGATCCATAAGTATCCTTGATATTTATGGGTTTGAATCATTCCAGAAAAACAGCTTTGAACAGCTTTGCATAAACTATGCCAATGAGAGGCTTCAACAACATTTCAATCGGCATCTGTTTAAATTGGAGCAACAGGACTATGAAATAGATGGCGTTGATTGGACCAAAGTAGATTTTGAAGACAATCAAGAGTGTTTGGATCTCTTTGAAAAGAAGCCTATTGGGCTACTCTCTCTGTTGGATGAGGAGTCAAATTTCCCAAGGGCCACTGATCTAACACTTGCCAACAAACTTAGGCAGCACCTGCAAGCTAATCCTTGCTTTAAAGGGGAATGGGGAAAGGGTTTCAGTGTTTGTCATTATGCAGGAGAGGTCGTGTATGATACAAATGGCTTTCTAGAAAAGAACAGAGATCCAATGCCTTCTGATTCTATTCAACTACTATCATCATGTAGTTGTGAACTGCTGCAGTCGTTCTCCAAGACGCTTAACCAGTCTCAAAAGCAATCAAATTCTCAGCACGTAGGTGCTTTAGATTCACAAAGGCAGAGTGTTGGCACAAAGTTCAAGGGTCAATTATTCAAGTTGATGCATCAATTGGAAAGCACGACGCCTCACTTTATTCGATGTATAAAGCCAAATGCAAAGCAACTTCCTGGCATATATGATGAAGATCTCGTTATCCAGCAGCTCAAATGTTGTGGAGTTTTGGAGGTTGTTAGGATTTCAAGGGCCGGATATCCTACTCGAATGACACATCAAGAGTTTGCCGAAAGGTATGGCTTTCTGCTCTATGACGCTTACACATCTCAAGATCCGTTGAGTGTCTCGATTGCTGTTTTGCAACAATTTAATATACCTCCTGAAATGTACCAAGTTGGCTTCACCAAACTATATCTTCGAACGGGGCAGGTTGGTGCACTCGAGGATAAGAGAAAACATGTTTTGCAGGGTATACTCGGGGTTCAAAAATGTGCTCGCGGTCATCAAGCTCGCAGTCATTACAATAAACTTAAGAATGGAGTGGCAACTTTACAATCATTTGTTCGTGGAGAAATTGCGAGAAGGAAATATGGTGTTATGGTGAAGTCTTCTATAACCATTTCTTCTGAAAATATCGAGGAAATACAAGCTGTCTTAACACTACAATCTGTAATTCGTGGATGGTTGGTTCGAAAGCATGATAGTAGATTTAATAAGTTCAGGAAATATCTTGAGAATGGAAAATCTAGGCGAAGATCGCGGTCGAAGATACCAGAAGACAAGGATGCATTGAAAGATCGGGTCCAAAACCTGCCTTCGGCTTTAGCAGAACTCCAAAAGCGGGTTGCCAAGGCCGAAGCAACTATAGAGCAAAAAGAAGAGGAAAACGCCGAGTTGAGGGAACAGCTAAAACAATTTGAGAAAAGGTGGATTGAATACGAGAAGAAGATGAAAACAATGGAGGAAATGTGGCAAAGGCAAATGTCATCTTTGCAAATGAGTCTTGCTGCAGCTAGAACCAGCCTTGCATCTGAGAATGTGAACGGTCAACCTTCAAGACATGATGTCGCATCACCGTTGCCTTTCTGTTATGATTCCGAGGACGCCACGTCAATTGGATCTCGAACTCCTCGAACGCCCGGTTGCAGCACACCGTTGAAATATTCTACCAGTCTTTCCGATGCCAGAGCAACAATGAGAGACGGTCACAGTACTTTAAGCAATCTGATGAGAGAATTCGAGCAGCGCAAACAGACGTTTGATGAAGATGCAAGAGCTTTGGTTGAGGTTAAATCAACAGGGCATTCAACGCATTCGAATGCCATTGACGAATTGCGGAAACTCAAACACGTGTTTGAAGGGTGGAAGAAAGATTACAAGACTAGATTAAGGGAGACAAAAGCAAGAATTAAGTTAGGGAATTCGGAAATGGAAAAAAGTCGGCGAAAATGGTGGGGGAAATTGAGCTACAGAGCACTATAA 3615 0.4138 MMLSASPSSLARSSLEEMLESLRLRDESEKPKDLPPALPARPMSRGRLPPARRSLPKSFKVDGDGNKEMGHKRKGSFGNKKLMLDVESPYVFVSEENCVSEHPSPVPVSSITVDDSSVASVPPPSLELEENDNVSYFIKKKLHVWCRQPKGKWGLGRIQSTSGEQASVSLSNGNIMKVARTDLLPANPDILEGVDDLIQLSYLNEPSVLHNLQFRYSQDMIYSKAGPILIALNPFKDVQIYGNEYVSAYRDKSLDSPHVYAMVDSAYNEMIGDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSCGIENEVLQTNVILEAFGNAKTSKNDNSSRFGKLIEIHFSATGKMCGAKIQTFLLEKSRVVQLADGERSYHIFYQLCAGSSPDIKARLNLRAASEYKYLNQSDCMTIDGVDDAKKFHRLKKALDVVQMCKEDQERAFKMLAAVLWLGNISFQDNDNDNNHIEVANDEAVSNAASLMGCSSHELITVLSTHKIQAGKDTITKTLTLRQAIDARDALAKFIYASLFDWLVEQVNKSLEVGKRRTGRSISILDIYGFESFQKNSFEQLCINYANERLQQHFNRHLFKLEQQDYEIDGVDWTKVDFEDNQECLDLFEKKPIGLLSLLDEESNFPRATDLTLANKLRQHLQANPCFKGEWGKGFSVCHYAGEVVYDTNGFLEKNRDPMPSDSIQLLSSCSCELLQSFSKTLNQSQKQSNSQHVGALDSQRQSVGTKFKGQLFKLMHQLESTTPHFIRCIKPNAKQLPGIYDEDLVIQQLKCCGVLEVVRISRAGYPTRMTHQEFAERYGFLLYDAYTSQDPLSVSIAVLQQFNIPPEMYQVGFTKLYLRTGQVGALEDKRKHVLQGILGVQKCARGHQARSHYNKLKNGVATLQSFVRGEIARRKYGVMVKSSITISSENIEEIQAVLTLQSVIRGWLVRKHDSRFNKFRKYLENGKSRRRSRSKIPEDKDALKDRVQNLPSALAELQKRVAKAEATIEQKEEENAELREQLKQFEKRWIEYEKKMKTMEEMWQRQMSSLQMSLAAARTSLASENVNGQPSRHDVASPLPFCYDSEDATSIGSRTPRTPGCSTPLKYSTSLSDARATMRDGHSTLSNLMREFEQRKQTFDEDARALVEVKSTGHSTHSNAIDELRKLKHVFEGWKKDYKTRLRETKARIKLGNSEMEKSRRKWWGKLSYRAL 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02798 1204 Pfam IQ calmodulin-binding motif 893 908 IPR000048 GO:0005515
Vifa1g02798 1204 Pfam IQ calmodulin-binding motif 927 944 IPR000048 GO:0005515
Vifa1g02798 1204 CDD MYSc_Myo8 206 851 IPR036022 -
Vifa1g02798 1204 ProSiteProfiles IQ motif profile. 925 953 IPR000048 GO:0005515
Vifa1g02798 1204 ProSiteProfiles Myosin motor domain profile. 192 863 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g02798 1204 MobiDBLite consensus disorder prediction 57 76 - -
Vifa1g02798 1204 Gene3D - 375 431 - -
Vifa1g02798 1204 Gene3D - 919 1060 - -
Vifa1g02798 1204 MobiDBLite consensus disorder prediction 21 76 - -
Vifa1g02798 1204 PRINTS Myosin heavy chain signature 222 241 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g02798 1204 PRINTS Myosin heavy chain signature 319 346 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g02798 1204 PRINTS Myosin heavy chain signature 552 580 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g02798 1204 PRINTS Myosin heavy chain signature 605 633 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g02798 1204 PRINTS Myosin heavy chain signature 276 301 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g02798 1204 PANTHER MYOSIN 185 1194 - -
Vifa1g02798 1204 Gene3D - 869 915 - -
Vifa1g02798 1204 Gene3D Kinesin motor domain 191 796 IPR036961 -
Vifa1g02798 1204 Gene3D - 564 753 - -
Vifa1g02798 1204 ProSiteProfiles IQ motif profile. 867 894 IPR000048 GO:0005515
Vifa1g02798 1204 FunFam Unconventional myosin-XIX 564 753 - -
Vifa1g02798 1204 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 139 188 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa1g02798 1204 SMART iq_5 864 886 IPR000048 GO:0005515
Vifa1g02798 1204 SMART iq_5 924 946 IPR000048 GO:0005515
Vifa1g02798 1204 SMART iq_5 887 909 IPR000048 GO:0005515
Vifa1g02798 1204 FunFam Myosin heavy chain 375 431 - -
Vifa1g02798 1204 Coils Coil 972 1034 - -
Vifa1g02798 1204 Gene3D - 797 864 - -
Vifa1g02798 1204 ProSiteProfiles IQ motif profile. 888 917 IPR000048 GO:0005515
Vifa1g02798 1204 Gene3D Myosin VI head, motor domain, U50 subdomain 432 541 - -
Vifa1g02798 1204 SMART MYSc_2a 186 864 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g02798 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 914 IPR027417 -
Vifa1g02798 1204 Pfam Myosin head (motor domain) 194 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02798 Vifa-Chr1 435350150 435358615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02798 1 1198 Myosins gene family AT5G54280 62.399 0.0 1542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02798 K10357 - gmx:100819335 1895.94