Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02790 ATGGCATTGATGGCAGCCACAGCAAGCTCAGCCACTGTTGTTAAGCAAACTCCTTTCCTTGGTCAAAGAAAGAGTGCTAATCCTCTTAGAGATGTGGTTGCCATGGGAACTTCCAAATTCACCATGGGAAATGATTTGTGGTATGGACCAGACAGAGTGAAATATTTAGGACCTTTTTCAGCTCAGACTCCTTCATACTTAACTGGAGAATTCCCTGGTGACTATGGATGGGACACTGCTGGTTTATCTGCTGATCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGAAGATGGGCTATGCTAGGAGCGCTAGGATGCATAACACCAGAAGTACTTCAAAAATGGGTTAGAGTTGACTTCAAAGAACCAGTTTGGTTCAAAGCAGGATCACAGATATTCTCAGAAGGTGGACTTGACTATTTAGGAAACCCTAACCTTGTTCATGCACAAAGTATCTTAGCAGTACTAGGTTTCCAAATTGTTCTAATGGGGCTCGTAGAAGGCTTCCGCATCAACGGTCTTCCCGATGTTGGAGAAGGCAATGATCTTTACCCTGGTGGCCAATACTTTGATCCTCTTGGTCTTGCCGACGATCCAGTCACTTTCGCCGAACTCAAAGTGAAGGAAATCAAGAATGGAAGATTGGCTATGTTCTCTATGTTTGGTTTCTTTGTTCAAGCTATTGTGACTGGTAAAGGACCTTTGGAGAATCTTTTGGATCACCTTGATAACCCTGTTGCTAACAATGCTTGGGTTTATGCTACAAAGTTTGTGCCTGGTGCTTAA 798 0.4386 MALMAATASSATVVKQTPFLGQRKSANPLRDVVAMGTSKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02790 265 FunFam Chlorophyll a-b binding protein, chloroplastic 54 258 - -
Vifa1g02790 265 Gene3D Chlorophyll a/b binding protein domain 54 258 - -
Vifa1g02790 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 8 264 IPR001344 GO:0009765|GO:0016020
Vifa1g02790 265 Pfam Chlorophyll A-B binding protein 64 231 IPR022796 -
Vifa1g02790 265 SUPERFAMILY Chlorophyll a-b binding protein 46 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02790 Vifa-Chr1 434581474 434582693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02790 10 264 Chloroplast and Mitochondria Gene Families AT2G05070 68.421 2.38e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02790 K08914 - sly:101243766 508.834