Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02786 ATGGCCCCTAACCAACACCATTCACGTTTTACTTCTAACATGCAGATGCAGCACTACTACTACAACAACACCGATGACGATAGCGAGGATATCGACAACGAGATTGTCAACAACAGCAACACGGACGAGGACGAATACGAGTACGAGGACGAAGAAGAGGAGGAAGAAGTAGGAAAATGGGTTGAAGAATGGAATAGAATCTTTCTTTTGGTGTGCGCGATGGGTTTATTTGTGGACCCACTATTTTTCTACGCCCTATCAATAAGTGACACGTGTATGTGTTTGTTTGTAGACGGTTGGTTACTCGTTACCGTCACCGTTATCCGTTGCATGACGGACGCGTTACATCTCTGGAACATTTGGTTACAGTTCTATATTCAGAAACGCTCCTCTTTTGGCTTCATTCATAATACTCATCATCATCACCATCTTCGTAATTCTTCACATGCTCTTCGTTACTTCAAAGCTAGCAAGGGTTTTTTCTTTGACATTTTTGTCCTTCTCCCTCTCCCTCAGATTTTGCTATGGGTGACAATTCCATCTCTGTTAAAGGAAGGTTCAATTACGAGGGTGATGAGTGTATTGTTGATCATGTTTGTGTTTCAATACCTTCCTAAAATTTACCACTCAGTATGCTTTGTGCGTCGCAACCTCTCTGGTTACATTTTTGGAACAGTTTGGTGGGGTTTCGCTCTCAACATGATAGCTTATTTTGTTGCTTCCCATGCAGTAGGGGCATGTTGGTATTTGTTGGGACTTCAAAGGGCATCAAAGTGTCTGGAAGAGCAATGTGGTACAACAATAGGTTGTGGATTGAGAACATTGTGTTGCAAGGAACCTATATATTACGGAAGCAGTAGCATGTTGAAGAAATTAGAGAGAACAAGGTTGATATGGGCACAGAACAGAGAAGCAAGGTCTACATGTTTAGCTAGTGCTGATAACTATGACTATGGAGTTTATGAATGGAGTGTTCAACTTGTAACAAATAATAGCCGTTTGGAAAAGGTACTCCTCCCAATCTTTTGGGGCCTAATGACTCTAAGCACTTTTGGGAACCTCCAGAGCACAACGGAAAGGATGGAAGTCGTTTTCATTATTATTGTATTGACTAGTGGCCTCCTTTTAGTCACTATGCTAATTGGAAACATCAAGGTGTTTTTACATGCTACAACATCGAAGAAGCAAGCGATGAAACTGAAGATGACAAACATTGAATGGTGGATGAGCAAAAGACGGCTGCCACACGAGCTCAGGCAGCGTGTGCGCAACTACGAGAGACAGTGCTGGGCCGCGATGCGTGGAGTTGATGAATGTCAGTTGATCAAAATTCTTCCCGAGGGTTTGAGAAGAGACATCAAGTACCATCTTTGTTTAGGTTTGGTGAGACAGGTGCCACTGTTTCAGCATATGGATGAATTGGTGCTAGAGAACATTTGTGACCGTGTCAAGTCCCTTGTATTCACAAAGGGAGAAACATTAACAAGAGAAGGAGAGCCAGTTCAAAGAATGCTATTTGTAGTAAGGGGTCATCTTCAAAGTAGTCAAGTCCTAAGAGATGGAGTAAAAAGTTGTTGCATGTTAGGGCCAGGAAATTTTAGTGGAGATGAGCTTCTATCATGGTGTTTAAGAAGACCTTTTATACAACGACTTCCAACATCATCATCTACTTTGGTTACACTTGAAACATGTGAGGTATTTGGGCTTGAAGCCGAGGATGTCAAATATGTGACACAACATTTTAGGTACACATTTGCAAAGGAAAATGTTAGGAGGAGTGTAAGATATTACTCACCTGGTTGGAGAACTTGGGCTGCTGTGGCAATTCAGTTGGCTTGGAGAAGGTATAGACATAGACTGACTTTGAGTTCTTTGTCCTTTATTAGGCCTCGTAGACCTTTGTCAAGGTCCACTTCTTTGGAAGAGGATAGGCTTCGCCTTTATACGGCTTTGTTAACCTCACCAAAGCCCAATCAAGATGATTTTTTCTAG 1992 0.4207 MAPNQHHSRFTSNMQMQHYYYNNTDDDSEDIDNEIVNNSNTDEDEYEYEDEEEEEEVGKWVEEWNRIFLLVCAMGLFVDPLFFYALSISDTCMCLFVDGWLLVTVTVIRCMTDALHLWNIWLQFYIQKRSSFGFIHNTHHHHHLRNSSHALRYFKASKGFFFDIFVLLPLPQILLWVTIPSLLKEGSITRVMSVLLIMFVFQYLPKIYHSVCFVRRNLSGYIFGTVWWGFALNMIAYFVASHAVGACWYLLGLQRASKCLEEQCGTTIGCGLRTLCCKEPIYYGSSSMLKKLERTRLIWAQNREARSTCLASADNYDYGVYEWSVQLVTNNSRLEKVLLPIFWGLMTLSTFGNLQSTTERMEVVFIIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMKLKMTNIEWWMSKRRLPHELRQRVRNYERQCWAAMRGVDECQLIKILPEGLRRDIKYHLCLGLVRQVPLFQHMDELVLENICDRVKSLVFTKGETLTREGEPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIQRLPTSSSTLVTLETCEVFGLEAEDVKYVTQHFRYTFAKENVRRSVRYYSPGWRTWAAVAIQLAWRRYRHRLTLSSLSFIRPRRPLSRSTSLEEDRLRLYTALLTSPKPNQDDFF 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02786 663 MobiDBLite consensus disorder prediction 26 50 - -
Vifa1g02786 663 CDD CAP_ED 467 573 IPR000595 -
Vifa1g02786 663 ProSiteProfiles cAMP/cGMP binding motif profile. 467 546 IPR000595 -
Vifa1g02786 663 FunFam Cyclic nucleotide-gated ion channel 1 394 458 - -
Vifa1g02786 663 Gene3D Helix hairpin bin 392 458 - -
Vifa1g02786 663 Pfam Ion transport protein 64 384 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa1g02786 663 SUPERFAMILY cAMP-binding domain-like 393 581 IPR018490 -
Vifa1g02786 663 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 49 629 - -
Vifa1g02786 663 Pfam Cyclic nucleotide-binding domain 487 575 IPR000595 -
Vifa1g02786 663 FunFam cyclic nucleotide-gated ion channel 4 465 583 - -
Vifa1g02786 663 SUPERFAMILY Voltage-gated potassium channels 58 387 - -
Vifa1g02786 663 Gene3D Jelly Rolls 465 583 IPR014710 -
Vifa1g02786 663 SMART cnmp_10 467 593 IPR000595 -
Vifa1g02786 663 MobiDBLite consensus disorder prediction 24 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02786 Vifa-Chr1 434139936 434143350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02786 59 662 Ion Channels AT5G54250 75.205 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02786 K05391 - gmx:100800795 1024.23