Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02777 ATGCAGGGTATTTGTTTGATGGTGTTGTTGATGGTGAAAATTGTGTTAGGGAATTCAGATACTGATGCACTTGTTGAACTAAAGAAGGGTATTCAAACTGACCCTTTTGGATTAGTTCTTAATTCTTGGGATTCCAAGTCATTAGACTCTAATGGATGTCCTCAAAACTGGTATGGAGTATTCTGTACTGAAGGCAATGTTATATCTATCACTCTTGACAATGCCGGTTTGGTTGGCGAGTTTAATTTCGTTGCAATTAGCACCCTTCCAATGCTCCGTAATTTGACAGTTGTAAACAACAGTTTCACCGGAAGTATGTCACGAATCGGTCCGATGAAATCACTTAATTTTCTCGACTTGTCTATCAACAAGTTTACTGGCTCGTTTCCTTCTACATTCGTCGAATCGCGTAGTTTAGTGTATGTGAATCTCTCTTCGAATGAGTTCAGCGGCACTATCCCGAACGTGTTTCACAAACTTGAGGAGTTGAAGTATATAGATATTCGCGGTAATAACTTTTCTGGTGATGTTATGCATATCTTTTATCAGATGGGAAGTGTGTTACATGTTGATTTAAGCGCCAACAGGTTTTCTGGTGCGTTGGATTTAGGACTCGGAGGTGTTTCGTTTCAATTCTCGATTCGATATTTAAATGCTAGCCACAATTCTTTGACGGGTGAGCTTTTTGCTCACGATGGTATGCCGTATCTTGATAATTTAGAGGTTTTTGATGCTAGTAATAACCAGTTAGTCGGTAATATACCTTCCTTCGGATTTATTGTATCGCTAAGGATTCTTCGGCTCCAATGCAATCAGTTGACAGGTTCCCTGCCAGAAACTTTGTTGAAGGAAAGTTCAACGATGTTGTCTGAACTGGATCTTAGTCAAAACAAGCTTGAAGGTTCCATTGGAAGCATTACTTCATTGACTCTAAGGAAGCTTAATATATCTTCAAACAAATTATCATGCTCATTACCTTTCAAAGTAGGACACTGTGCCATCATAGATTTGAGTAACAACATGTTGTCAGGTAATTTGTCAAGGGTCAAGTATTGGGGAAACTATGTAGAAGTTATTCAGCTAAGTTCAAACTCATTAACCGGAGCACTTCCGTACGAAACTTCTCAGTTTCTAAGGTTAACTTCACTTAAGGTATCCAATAACTCATTGGAGGGATTTCTGCCACCAGTTTTAGGAACATTTCCAGAACTAAAAGAGATTGATCTGAGTCTCAACCGGCTTTCTGGCTTCCTCCTACCGACCCTTTTCGCCTCGACCAAATTGACTACTCTTAATCTCTCAAACAATAAGTTTTTTGGACCAATTCCTTTTCAACTTCCAAGTAGTTCATTGCTTTCTTCCGAAAATTATAGTTTGACGTCGCTTGATCTTTCGAACAATAACTTGAATGGAACTCTTTCTCCAAAAATTAAGGAGCTTCATAATTTGGAATATCTTAACCTATGTAACAACAAATTGGAAGGTACTATTCCTAATGGACTTCCAGATGAATTAAGAGGATTCAATGTGTCCTTTAACAACTTTTCTGGTGTTGTACCTGATAACTTACTGCAGTTTCCTGAGTCAGCATTTCATCCAGGAAATCTTATGTTGATATTCCCGAATTCTCCATTGTCGCCTAAAGATAGTTCCAATTCCATCCTAGGTTTGAGGTCACATAAGAAAGTTTTCTCTAGGAGTGTCTTCATTACATGTTTAGTTACTGGTGCTTCTGTGATTGCTATTATGGCTGCAACGATTTTTTATAGGATTCGTCGGAAAAAAGAAATGGCTTCTAAACAAGACGCGACCGCTAGTGACATTGTCCAAGAGAGTACTTCATCATCAAAGAGAAGAAATTTGGACTCTTTGCTGCCTTCTCAGAGTGATGATACCGAAAACATTCATCCAACTGTAAAGAAGCCTCAACATCCTGAGTTAGTTAAGGACGAGGAAGGAACGTCTTCACCAATGTCTATTTTGTCGGCTTCGAATCCTTCACCTTCTACAAGCCGTCAGTTTGAGAATCCTAGCTCGCTCAATGTATCATCTCCGGATAAACTGGTCGGGGACTTACATCTATTCGATGGATCGTTGATGTTAACTGCAGAAGAACTTTCGTGTGCTCCGGCTGAAGTTATTGGTAGGAGTTGTCATGGAACACTCTACAAAGCTACACTTGAATCTGGTCATGTTTTGGCTGTCAAATGGTTAAGAGAAGGAATAACTAAAGGCAAAAAGGAGTTGGCAAGAGAAATAAAGAAACTCGGGACAATCAAGCATCCGAGTTTGGTTTCTTTTCTTGGTTGCTACCTCGGGCCAAAGGAGCATGAGAGATTGATTATATCAAATTTCATGAATGCATATTCTTTGGACATTTATCTCCATGAGGCTGATAGAAGAAATCTCAATCCTTTGTCCCTTGACGAAAGGCTTAGGGTGGCCGTAGAAGTCGCGCGGTGTCTACTTTTCCTACACACTGAGAAATCCATACCTCATGGCAATCTCAAATCCACAAACATTCTACTAGAAACTCCAAACAGAAATGCCTTGCTCACTGACTACACCCTGCATCGAATACTCACCGCAGCTGGCACGTCCGAGCAAGTTCTGAATGCAGGTGCACTTGGTTACCGTCCGCCTGAGTTTGCTAGATCAACCAAACCAAGCCCTTCTTTAAAGAGTGATGTCTACGCATTCGGAGTCGTCTTGTTAGAGCTCCTAACAGGAAGAAAGTCAGGAGAAATAGTGTCGGAGATTCCTGGCGTGGTGGAACTTACGGAATGGGTGAGATTCTTAGTCGAACGAGATCGCTCTAACCAATGCATTGATAAGTCCCTTGCAGAAGGATCTATAATTCTTGATGAAATGCTAAAAGTGGCTATAAGATGCATTCTTCCAGCATCTGAAAGGCCTGACATGAAAACAGTCTTTGAAGATCTTTCAACAATAAGGGAGAGTTGA 2964 0.4042 MQGICLMVLLMVKIVLGNSDTDALVELKKGIQTDPFGLVLNSWDSKSLDSNGCPQNWYGVFCTEGNVISITLDNAGLVGEFNFVAISTLPMLRNLTVVNNSFTGSMSRIGPMKSLNFLDLSINKFTGSFPSTFVESRSLVYVNLSSNEFSGTIPNVFHKLEELKYIDIRGNNFSGDVMHIFYQMGSVLHVDLSANRFSGALDLGLGGVSFQFSIRYLNASHNSLTGELFAHDGMPYLDNLEVFDASNNQLVGNIPSFGFIVSLRILRLQCNQLTGSLPETLLKESSTMLSELDLSQNKLEGSIGSITSLTLRKLNISSNKLSCSLPFKVGHCAIIDLSNNMLSGNLSRVKYWGNYVEVIQLSSNSLTGALPYETSQFLRLTSLKVSNNSLEGFLPPVLGTFPELKEIDLSLNRLSGFLLPTLFASTKLTTLNLSNNKFFGPIPFQLPSSSLLSSENYSLTSLDLSNNNLNGTLSPKIKELHNLEYLNLCNNKLEGTIPNGLPDELRGFNVSFNNFSGVVPDNLLQFPESAFHPGNLMLIFPNSPLSPKDSSNSILGLRSHKKVFSRSVFITCLVTGASVIAIMAATIFYRIRRKKEMASKQDATASDIVQESTSSSKRRNLDSLLPSQSDDTENIHPTVKKPQHPELVKDEEGTSSPMSILSASNPSPSTSRQFENPSSLNVSSPDKLVGDLHLFDGSLMLTAEELSCAPAEVIGRSCHGTLYKATLESGHVLAVKWLREGITKGKKELAREIKKLGTIKHPSLVSFLGCYLGPKEHERLIISNFMNAYSLDIYLHEADRRNLNPLSLDERLRVAVEVARCLLFLHTEKSIPHGNLKSTNILLETPNRNALLTDYTLHRILTAAGTSEQVLNAGALGYRPPEFARSTKPSPSLKSDVYAFGVVLLELLTGRKSGEIVSEIPGVVELTEWVRFLVERDRSNQCIDKSLAEGSIILDEMLKVAIRCILPASERPDMKTVFEDLSTIRES 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02777 987 SUPERFAMILY Protein kinase-like (PK-like) 711 981 IPR011009 -
Vifa1g02777 987 Gene3D Phosphorylase Kinase; domain 1 706 785 - -
Vifa1g02777 987 Pfam Protein tyrosine and serine/threonine kinase 712 922 IPR001245 GO:0004672|GO:0006468
Vifa1g02777 987 Gene3D Ribonuclease Inhibitor 453 528 IPR032675 -
Vifa1g02777 987 Gene3D Transferase(Phosphotransferase) domain 1 786 987 - -
Vifa1g02777 987 FunFam Nuclear pore complex protein NUP107 17 179 - -
Vifa1g02777 987 SUPERFAMILY L domain-like 335 525 - -
Vifa1g02777 987 ProSiteProfiles Leucine-rich repeat profile. 288 310 IPR001611 GO:0005515
Vifa1g02777 987 MobiDBLite consensus disorder prediction 655 682 - -
Vifa1g02777 987 Pfam Leucine rich repeat N-terminal domain 18 62 IPR013210 -
Vifa1g02777 987 PANTHER OS07G0626500 PROTEIN 6 93 - -
Vifa1g02777 987 Gene3D Ribonuclease Inhibitor 356 452 IPR032675 -
Vifa1g02777 987 MobiDBLite consensus disorder prediction 634 651 - -
Vifa1g02777 987 MobiDBLite consensus disorder prediction 603 633 - -
Vifa1g02777 987 Gene3D Ribonuclease Inhibitor 181 355 IPR032675 -
Vifa1g02777 987 Gene3D Ribonuclease Inhibitor 18 180 IPR032675 -
Vifa1g02777 987 Pfam Leucine Rich Repeat 482 501 IPR001611 GO:0005515
Vifa1g02777 987 Pfam Leucine Rich Repeat 427 451 IPR001611 GO:0005515
Vifa1g02777 987 FunFam Leucine-rich repeat receptor-like protein kinase 693 785 - -
Vifa1g02777 987 ProSiteProfiles Protein kinase domain profile. 708 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02777 987 SUPERFAMILY L domain-like 20 326 - -
Vifa1g02777 987 MobiDBLite consensus disorder prediction 600 682 - -
Vifa1g02777 987 PRINTS Leucine-rich repeat signature 459 472 - -
Vifa1g02777 987 PRINTS Leucine-rich repeat signature 480 493 - -
Vifa1g02777 987 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02777 Vifa-Chr1 432822397 432825786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02777 18 985 Receptor kinase-like Gene Family AT5G01890 28.766 1.33e-80 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g02777 PK_Tyr_Ser-Thr 6.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02777 - - psat:127117920 1751.87