Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02758 ATGGAAGCTAATAAACCAGTAACAACATCTACTGAACAACCACAACCCATAAGATGTAAAGCGGCGGTTTGTCGCAAACCCGGGGAGCCATTGATTATTGAGGAGATCTTTGTGGCACCACCAATGCCACGCGAAGCTCGGATTCGTATCGTATGCACTTCTCTTTGTCATAGCGATATCACGTTTTGGAAAATGCGGGAACCTCCTGCAATATTTCCAAGGATTCTTGGTCATGAAGCAATTGGGGTTGTGGAAAGTGTTGGAGAGGAAGTAACAGAAATTACAAAAGGAGACATTGTTATTCCAATCTTCCTTGCTGATTGTGAAGAGTGTATAGATTGCAAATCAACAAAGAGCAACCTTTGTTCAAACTTTCCTTTCCAAATTTCACCTTGGATGCTTAGATATGCTAACTCAACAAGATTCACTGATCTAAATGGAGATATTATACACCATTTCATGTTTGTCTCTAGTTTTAGTGAGTACACTGTGGTTGACATTGCCAATCTACTCAAGATTGATCCAGCAATTCCTCCTAATAGGGCTTGCCTCCTCAGTTGCGGTGTATCAACAGGGGTAGGAGCTGCTTGGAAAACAGCAAATGTGGAGCCAGGTTCTACAGTAGCTATTTTTGGACTTGGATGTATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATAATAGGTGTGGATATCAAGCCAGAAAAATTTGACATTGGAAAGAAATTTGGAGTAACAGACTTCATTAATTCTGGAGAATGTGAAAACAAATCTGTAAGTCAGGTTATCATAGAGATGACTGGTGGTGGAGCTGATTATTGTTTTGAATGTGTTGGTATGGCATCATTGGTGCAAGAAGCATATGCTTCATGTAGAAAGGGTTGGGGAAAAACAATTGTGTTAGGAGTGGACAAGCCAGAATCCATGTTGAGTTTTAATTGTAATGGGGTCCTTGTTCAAGGGAAGACTCTCATGGGATCCTTATATGGAGGACTCAAACCCAAATCTGATGTACCTATTCTTCTTAAACGCTACATGGACAAGGAACTGATGTTGGACGAGTTTGTTACACATGAGGTGGAGTTTAAAGACATCAACAAAGCTTTTGATTTATTGGTTAATGGAGAGTGTCTCAGATGTGTAATTTGGATGGACAAATGA 1176 0.4056 MEANKPVTTSTEQPQPIRCKAAVCRKPGEPLIIEEIFVAPPMPREARIRIVCTSLCHSDITFWKMREPPAIFPRILGHEAIGVVESVGEEVTEITKGDIVIPIFLADCEECIDCKSTKSNLCSNFPFQISPWMLRYANSTRFTDLNGDIIHHFMFVSSFSEYTVVDIANLLKIDPAIPPNRACLLSCGVSTGVGAAWKTANVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDIKPEKFDIGKKFGVTDFINSGECENKSVSQVIIEMTGGGADYCFECVGMASLVQEAYASCRKGWGKTIVLGVDKPESMLSFNCNGVLVQGKTLMGSLYGGLKPKSDVPILLKRYMDKELMLDEFVTHEVEFKDINKAFDLLVNGECLRCVIWMDK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02758 391 FunFam Alcohol dehydrogenase 6 22 204 - -
Vifa1g02758 391 PANTHER ALCOHOL DEHYDROGENASE 15 387 - -
Vifa1g02758 391 Gene3D - 192 332 - -
Vifa1g02758 391 SUPERFAMILY GroES-like 13 200 IPR011032 -
Vifa1g02758 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 177 352 IPR036291 -
Vifa1g02758 391 FunFam S-(hydroxymethyl)glutathione dehydrogenase 192 332 - -
Vifa1g02758 391 Gene3D - 22 384 - -
Vifa1g02758 391 Pfam Alcohol dehydrogenase GroES-like domain 44 172 IPR013154 -
Vifa1g02758 391 Pfam Zinc-binding dehydrogenase 216 339 IPR013149 -
Vifa1g02758 391 SUPERFAMILY GroES-like 339 388 IPR011032 -
Vifa1g02758 391 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 77 91 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02758 Vifa-Chr1 430328256 430330645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02758 44 366 Monolignol Biosynthesis Gene Families AT4G37990 22.561 1.46e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02758 K00121 - gmx:100806887 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02758 1 430328256 430330645 Vifa1g02758 1 430328256 430330645 ECH