LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g02742	ATGTCTTCCTCCTCCCATGATACCCCTCAACAGGAGAAAATAATCTCGAATTTTGAGGCAAGGACTCACGACCTGTTCTCAAGTTTTAAAGGCAAAGACACTCGTGCTACCTTCATTCACGACGTGTTCTTAAGTTTTAGAGGCGAAGACACTCGTGCTACCTTCACTTCACATCTACACGATTCCCTTCAAAACGCTGGAGTTCATGTTTTCCAGGACGATCATTCGCTTCAAAGGGGAGCCAACATTTCAGCATCACTCATTCAAGCAATTGAAGGCTCTCGAATTTCTGTTATCGTTTTTTCAGTTAATTACGCCGGATCCCGATGGTGTTTAGAAGAGCTGGTCAAAATAATGGAGTGTCACAGAACCAATGCTCAAATTGTTCTCCCGGTCTTCTACGGTGTAGATCCATCTGAAGTACGTCACCAAACTGGTGAATTTGGAAAATCCTTTCGTCTTCTTTTGGAGAGGATTTCACACGAAAATGGCAAGGGCATAGATTTGAACTTGGGGTTGAGTTATACAATAAACTTGTTCCCTCAATATCCTGAGTTTTTTCAATATCCCGAGCTTCGCCAGGCTGCTAGCCTTGCTGGCTTCGTAGTCCTAAATTCAAGGAATGAACATGAGGCTATCAAGGATATTGTTAAAAATGTCACGCGTTTGCTTGACAAGGCAGACCTATTTATTGCTAATAATCCAGTGGGAGTTGAATCTCGAGTGCAAGATATGATTCAACTGCTACAAAAGGATATCAAACAATCAAATGATGTTCTCCTACTAGGAATGTGGGGTATGGGAGGAGTTGGTAAAACAACCATTGCCAAAGCCATTTACAATAAAATTAGCCACAATTTTGACGGGAGAAGCTTCCTTGAAAATATTCGGGAAGTTTGGCAGGAAAATGCTACCCAAGTGAACTTACAAGAAAAACTCCTCTTTGATATTTTTAAAGAAATGACAACCAAAATACAAAGCATTGAGAACGGAAAAATCATATTAATGGATAGACTCCGCCATAAAAGAGTGCTAATTATACTTGATGATGTTAATACATTGGACCAACTCAATGCTTTGTGTGGAAGTCATACATGGTTTGGTGCAGGGAGTAGAATAATCATCACCACAAGAGATAGACATATACTTCGTGGAAATAGGGTTAACCAAGTATACAAAATGAAGCATATGGAGGAAAGTGAATCAATTGAGCTATTTAGTTGGCATGCATTCAAACAACCAAGTCCAACAGAAGATTTTGCTGAAATTTCTAGAAATGTAGTTGAGTATTCTGGTGGATTGCCGCTGGCTTTGGAAGTCCTTGGGTCGCATTTGTTTGATAGGGGGATAACCGAGTGGCATAGTGTATTGGGGAAACTCAAAAGAATTCCTAACGACCAAGTACAAAAGAAGCTCAAAATAAGCTATGATGGTTTAAATGATTATACCGAGAAAGAAATATTCCTTGACATAGCTTGTTTCTTTATTGGGATGAATCGAAATGATGTTATGCTTGTATTAAATGGCTGTGGACTTTTTGCAGAAATTGGAATAAGTATCCTTGTTGAGCGAAGCCTTGTAACTGTTGATGATAAGAACCAACTTGGAATGCACGATTTGCTTCGAGATATGGGAAGAGAAATCGTTCGTGAGAAATCACCAGAGGAGCTTGGGGCGCGTTGTAGGTTGTGGTTTCATGATGACGTGCTTGATGTATTATCAGATCAATCTGGAACAAAAGCTACCAAGGGGTTGTCTTTGAAGTTGCCAAGAGCTAATGCAAAATATTTTAGTACTAATGCATTTAAGAAGATGACGCAACTCAGACTGCTTCAACTTGCTGGAGTAAAACTTGATGGAGATTTTGAATATCTTTCAAGCAGTTTAAGATGGCTGTCATGGAATGAATTTCCTTTAACACACATACCTATAAATCTTTGTCGAAGAAATTTAGTTTCCATCGAGTTAGAGAGTAGCAATGTAACAATTTTGTGGAAAGATGCTCAGATGATGACATATCTGAAAGTTCTCAATCTTAGTCATTCACATTGTCTGACACACACCCCTGAATTTTCGTACATGCCTAATCTTGAAAAGCTAGTACTCGAAGACTGTTCAAGGTTGTCTGAGATTTCTCCTAGCATTGAACATCTGAGTAAAATTCTTCTGATAAATTTGGAAGACTGCATTAGCCTTTGTAGCCTCCCAAGAAGCATCTATAAGTTGAAATCTTTGAAAACTCTCATTCTTTCTGGTTGTATAAAGATTGACAAGTTGGAAGAGGATTTGGAACAGATGAAATCTTTAACCACCCTGCTTGCAAATAACACTGCAATAACAAAAGTGCCCTTTTCAGTGGTACGGTCCAAAAGCATTGGATATATTTCTCTGTGCGGCTATGAAGGATTGTCTTGTGATGTGTTTCCATCTATCATTTGGTCTTGGATGTCACCAACAAATAATGTCAAATTCCCATTTCAAACAGTTTCTCCCTTGTCATCTCTTGTTGCTTTAGGTGTACCAAGTAGTAGTTCTCACGAACTCTCATCTTTTTCTAACCACCTTCCAAAACTCCGAAGTCTTTGGGTGGACAGCAACTCAGAATATCAACTTTCTCTAGATGCAAAAATAATTTTGGATGCTTTATATGCCACAGTTTCTAAGGAATTTGAATCAACTGCAACTACATCTCAAGTATTAGACATGACTACTTCTACATTAATTCAACGCCGCAGTCAAATGCAGGTTTTGGGATCAAAACATTTCATGAATTCTCTTTTCATTCAAATGGGAATGGATTGCCAAGTCACCAATATTCTCAAAGAGAAAATTTTACAGAATATGAATACGGATGTCAATGGGAGTGGTGGTTGTTTGTTCCCGGGTGATAGCTATCCAGATTGGTTAACCTTTCATTCTGAAGGTTCTTCGGTAACTTTTAAAGTCCCTCAAGTAGAAGGGCGTAACTTGAAGACAATGATGTGTATTGTCTATACTACGACTCTAGATAACATAACAACAGATGGCCTTAAAATTTTGTTAGTAAAAAATTACACAAAGGCCACCATTCAGCTCTATAAGAGAGAGGCATTAGTCTCCTTGGAAGATGAAGAGAGGCAGAGAGTAGTATCAAGTTTAGAACCCGGTAACAAAGTGGAGATTGTTTTTGTTTTTGAGAACAGTTTGGTTGTGAAGAAGATAGCGGTTTATCTTATATACGATAAACCAATTGGTAAAATTATGGATCTATGTCATTTACCAGATTTGAATGTCGTTGCATGTTGTGATGATGAAAATGAATGCTCTGTCAAGAGATTTTCTACTCGAGAAGATCCCACAGATGACTTCGATCAGAACAGAAAGAAGAAAAATCGAGTGGAATGA	3384	0.3845	MSSSSHDTPQQEKIISNFEARTHDLFSSFKGKDTRATFIHDVFLSFRGEDTRATFTSHLHDSLQNAGVHVFQDDHSLQRGANISASLIQAIEGSRISVIVFSVNYAGSRWCLEELVKIMECHRTNAQIVLPVFYGVDPSEVRHQTGEFGKSFRLLLERISHENGKGIDLNLGLSYTINLFPQYPEFFQYPELRQAASLAGFVVLNSRNEHEAIKDIVKNVTRLLDKADLFIANNPVGVESRVQDMIQLLQKDIKQSNDVLLLGMWGMGGVGKTTIAKAIYNKISHNFDGRSFLENIREVWQENATQVNLQEKLLFDIFKEMTTKIQSIENGKIILMDRLRHKRVLIILDDVNTLDQLNALCGSHTWFGAGSRIIITTRDRHILRGNRVNQVYKMKHMEESESIELFSWHAFKQPSPTEDFAEISRNVVEYSGGLPLALEVLGSHLFDRGITEWHSVLGKLKRIPNDQVQKKLKISYDGLNDYTEKEIFLDIACFFIGMNRNDVMLVLNGCGLFAEIGISILVERSLVTVDDKNQLGMHDLLRDMGREIVREKSPEELGARCRLWFHDDVLDVLSDQSGTKATKGLSLKLPRANAKYFSTNAFKKMTQLRLLQLAGVKLDGDFEYLSSSLRWLSWNEFPLTHIPINLCRRNLVSIELESSNVTILWKDAQMMTYLKVLNLSHSHCLTHTPEFSYMPNLEKLVLEDCSRLSEISPSIEHLSKILLINLEDCISLCSLPRSIYKLKSLKTLILSGCIKIDKLEEDLEQMKSLTTLLANNTAITKVPFSVVRSKSIGYISLCGYEGLSCDVFPSIIWSWMSPTNNVKFPFQTVSPLSSLVALGVPSSSSHELSSFSNHLPKLRSLWVDSNSEYQLSLDAKIILDALYATVSKEFESTATTSQVLDMTTSTLIQRRSQMQVLGSKHFMNSLFIQMGMDCQVTNILKEKILQNMNTDVNGSGGCLFPGDSYPDWLTFHSEGSSVTFKVPQVEGRNLKTMMCIVYTTTLDNITTDGLKILLVKNYTKATIQLYKREALVSLEDEERQRVVSSLEPGNKVEIVFVFENSLVVKKIAVYLIYDKPIGKIMDLCHLPDLNVVACCDDENECSVKRFSTREDPTDDFDQNRKKKNRVE	1127

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g02742	1127	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	228	491	IPR027417	-
	Vifa1g02742	1127	Gene3D	-	396	480	IPR042197	-
	Vifa1g02742	1127	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	40	870	IPR044974	GO:0006952
	Vifa1g02742	1127	SUPERFAMILY	"Winged helix" DNA-binding domain	467	573	IPR036390	-
	Vifa1g02742	1127	SUPERFAMILY	L domain-like	583	870	-	-
	Vifa1g02742	1127	Gene3D	-	37	229	IPR035897	-
	Vifa1g02742	1127	SUPERFAMILY	Toll/Interleukin receptor TIR domain	36	155	IPR035897	-
	Vifa1g02742	1127	Coils	Coil	756	776	-	-
	Vifa1g02742	1127	SMART	till_3	39	179	IPR000157	GO:0007165
	Vifa1g02742	1127	Gene3D	-	230	391	IPR027417	-
	Vifa1g02742	1127	Gene3D	Ribonuclease Inhibitor	568	917	IPR032675	-
	Vifa1g02742	1127	FunFam	Disease resistance protein (TIR-NBS-LRR class)	37	226	-	-
	Vifa1g02742	1127	PRINTS	Disease resistance protein signature	740	756	-	-
	Vifa1g02742	1127	PRINTS	Disease resistance protein signature	261	276	-	-
	Vifa1g02742	1127	PRINTS	Disease resistance protein signature	431	445	-	-
	Vifa1g02742	1127	PRINTS	Disease resistance protein signature	338	352	-	-
	Vifa1g02742	1127	ProSiteProfiles	TIR domain profile.	38	224	IPR000157	GO:0007165
	Vifa1g02742	1127	Pfam	NB-ARC domain	243	476	IPR002182	GO:0043531
	Vifa1g02742	1127	Pfam	TIR domain	40	158	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g02742	Vifa-Chr1	427591949	427597532	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g02742	40	786	WRKY Transcription Factor Family	AT4G12020	30.949	3.22e-84	299

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g02742	-		-	tpra:123910008	1548.87