Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02734 ATGCTGCCAGATACATCACAATCTTGGTTTAATAAGAGCAGTAACCTGAAAGAATGTGAGAGATTCTGTTTAAGAAACTGTTCTTGCACAGCATATGCAAATTTAGATATAAGAGATGGTGGAAGTGGTTGCTTGATTTGGTTTAATAATATTTTGGATGGCAAAAAACTAAGCTCTGGAGGACAAGACCTTTACATGAGAGTTGCCGCTTCAGAACTAGCAGCAGATCATAACACAGGCTTGAACAAGAAAAAACTTGCAGGAATTTTTATAGGCTGTATTATGTTTATTGGAATAATCAATCCAACATGCCGATATGTGATTTTATCAACCATAGCTAATGCAACTAATAACTTCTCCATTGATAACAAATTGGGGCAGGGAGGTTTTGGACCAGTTTACAAGGGTATATTGGCAAATGGCCAAGATATAGCTGTGAAAAGACTTTGCAATACTTCAGGACAAGGATCAAGTGAGTTCATAAATGAAGTTAAGCTAATTGTCAATCTTCAGCACAGAAATTTTGTGAAAATGCTTGGATTCTGCATTGAAGATGATGAGAAACTCTTGATCTACGAATTCATGATCAATAGAAGCTTGGACTACTTCCTTTTCCGTTTGTGA 624 0.3638 MLPDTSQSWFNKSSNLKECERFCLRNCSCTAYANLDIRDGGSGCLIWFNNILDGKKLSSGGQDLYMRVAASELAADHNTGLNKKKLAGIFIGCIMFIGIINPTCRYVILSTIANATNNFSIDNKLGQGGFGPVYKGILANGQDIAVKRLCNTSGQGSSEFINEVKLIVNLQHRNFVKMLGFCIEDDEKLLIYEFMINRSLDYFLFRL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02734 207 Pfam Protein tyrosine and serine/threonine kinase 120 204 IPR001245 GO:0004672|GO:0006468
Vifa1g02734 207 Pfam PAN-like domain 2 53 IPR003609 -
Vifa1g02734 207 ProSiteProfiles Protein kinase domain profile. 119 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02734 207 SUPERFAMILY Protein kinase-like (PK-like) 97 206 IPR011009 -
Vifa1g02734 207 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 204 - -
Vifa1g02734 207 CDD PAN_AP_plant 2 69 - -
Vifa1g02734 207 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 101 194 - -
Vifa1g02734 207 Gene3D Phosphorylase Kinase; domain 1 95 194 - -
Vifa1g02734 207 ProSiteProfiles PAN/Apple domain profile. 1 69 IPR003609 -
Vifa1g02734 207 SMART ntp_6 1 68 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02734 Vifa-Chr1 426685440 426691860 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02734 109 205 Receptor kinase-like Gene Family AT4G04500 67.010 8.43e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g02734 PK_Tyr_Ser-Thr 6.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02734 - - ccaj:109807091 245.743