Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02732 ATGGAAAACTTCAAAGTGTTAGTTTATTGTTTTCTTCTCTTCCACTTCATACCAACCTTCAATACCTTGGAAACCATTCTTCCAGGACATTCAATCAAAGGTAATGAGACTCTAATCTCAACAAATGGAACCTTTGAAGCAGGTTTCTTCAATTTTGATAATTCAAATAACCAATATTTTGGTATATGGTACAAGGACATTTCACCAAGAACTGTTGTGTGGATAGCAAATAGAGATTCTGCAGTAGAAAACTCATCAGGAGTTTTGAATCTTACTGATAAAGGAACTATTGTTATCGTTGATTCCCAAGGTGTTATGAAATGGTCCTCTAATACATCAACAACAGCTGCAAAACCAATTCTGCAACTCTTGGAAAATGGAAACCTTGTTGTGAAAAATGAAACCAACCCAGATAATATTTTGTGGCAAAGTTTTGATTTTCCTGGTGACACTTTACTCCCTGGTATGAGAATTCGAAGCAGTTTGGTAAATGGCGATTATAAAGGTTTGGTTTCATGGAGAGATTCGCAAGATCCTTCAACTGGTTTGTATTCATATCATATAGATACTAATGGTTTTCCTCAAGTAGTGACTACTAAAGGTAACACATTATTTGTTCGAGTTGGTTCATGGAACGGAAATAGTTTATCAGGAGCTACTTCGGTGGATCTTTACAAATCCTTTAATATCACTTTTGTTATTACTGAGAAGGAAGTTTCTTATGGATATGAACTTCTGGACAACTCAACTGTTTCATGGTACAAGATCAATTCTTTGGGGCAAATAACACGTTTTTCACTGTCTGATGATAGAAAAACTTGGCAAATTTTCTTCGTTGGCCCAGCGGATCGGTGTGACAATTATGGTTTCTGTGGTGCGAATTCTAAGTGTGATCCTGATAAATCACCTGTGTGTGAATGTCTTGATGGTTTCATTCCGAAATCTAAAGAAAAATGGAGTTCACAAAATTGGACCGATGGTTGTGTTAGGAGAGTGAAGTTAGATTGTGATGATAATAATAGTGATGGCTTTTTGAATCAAGTCGGGATGAAGCTGCCAGATACATCAAAATCTTGGTTTAACAAGAGCATAAACCTTGAAGAATGTGAGAGATTCTGTTTAAGAAACTGTTCTTGCACAGGATATGCAAATTTAGATATCAGAGATGGTGGAAGTGGTTGCTTGATTTGGTTTAATAACATTTTGGATGTCAAAAAACTAAGCAATGGAGGACAAGAGTTTTACATGAGAGTTGCAGCTTCAGAACTAGACCATAACACAGGCTTGAACAAGAAAAAGCTTGCAGGAATTTTAGTAGGCTGTATAATGTTTATTGTAATCATGATAATACTTGGAATCGTCATACATCGAGTTCGGAGGAAGAAACTAGAGAAGTCAGGGATGAATCAAGTAGTTAGCTTGAAGAATCAAATTGACAAAAAAGAGAATGAAGACATTGACATACCAATATATGATTTATCAACAATAGTTAATGCAACCAATAACTTCTCCATTGATAACAAATTGGGGCAGGGAGGTTTTGGACCAGTTTACAAGGGTAAATTGGAAAATGGACAAGATATAGCTGTGAAGAGACTTAGCAATACTTCAGAACAAGGACCAAAGGAGTTCATAAATGAAGTTAAGCTAATTGCCAATCTTCAGCATAGAAATCTTGTGAAGCTGCTTGGCTGTTGCATTCAAAATCATGAGAAACTCTTGATCTATGAATTCATGATCAACAGAAGCTTGGACTACTTCATTTTCGACCAAACTAGAAAAAGTTTACTGCATTGGACTCGACGTTTTCAAATTATCCGTGGGATTGCTCGAGGACTCGTTTATCTTCATGAAGATTCTAGGCTAAGGATTATCCACCGAGATCTCAAGACAAGCAATATTCTTCTTGACGAAAATATGAATCCTAAAATATCAGATTTTGGTCTTGCTAGAACATTATGGGGAGACGAAGCGAAAGGCGAAACAAGAAGAGTAGTAGGAACTCATGGTTACATATCTCCAGAGTATGCAACACGCGGATTTTTTTCAGTGAAGTCTGATGTCTTCAGTTTTGGTGTTATCATACTAGAGACAATCAGTGGAAAAAAGAATAGAGAATATAGTGGCTATCATGATCTCGATCTTCTTGGACATGCATGGAGAATGTGGTGTGAAAAAACGCCGTTGGAACTGATAGATAAACCTCTAACCGATTCGATTGTTGTAGCAGAACCAGAAATATTGAGATGTGTTCAGATAGGGCTATTATGTGTTCAAGAGAGAGCTGATGATAGGCCAACAATGTCAGCTGCAATTCTAATGCTGAATGGTGAGAAAACATTGCCTGAGCCAAAGGAACCGGCCTTTTATCCACACCAATCTGGTTCTTCATCAGGAAGTGTTGTGCTGCATTCAAAAAATGAAGTTTCCATAACATTGTTACAAGCAAGATAG 2454 0.3696 MENFKVLVYCFLLFHFIPTFNTLETILPGHSIKGNETLISTNGTFEAGFFNFDNSNNQYFGIWYKDISPRTVVWIANRDSAVENSSGVLNLTDKGTIVIVDSQGVMKWSSNTSTTAAKPILQLLENGNLVVKNETNPDNILWQSFDFPGDTLLPGMRIRSSLVNGDYKGLVSWRDSQDPSTGLYSYHIDTNGFPQVVTTKGNTLFVRVGSWNGNSLSGATSVDLYKSFNITFVITEKEVSYGYELLDNSTVSWYKINSLGQITRFSLSDDRKTWQIFFVGPADRCDNYGFCGANSKCDPDKSPVCECLDGFIPKSKEKWSSQNWTDGCVRRVKLDCDDNNSDGFLNQVGMKLPDTSKSWFNKSINLEECERFCLRNCSCTGYANLDIRDGGSGCLIWFNNILDVKKLSNGGQEFYMRVAASELDHNTGLNKKKLAGILVGCIMFIVIMIILGIVIHRVRRKKLEKSGMNQVVSLKNQIDKKENEDIDIPIYDLSTIVNATNNFSIDNKLGQGGFGPVYKGKLENGQDIAVKRLSNTSEQGPKEFINEVKLIANLQHRNLVKLLGCCIQNHEKLLIYEFMINRSLDYFIFDQTRKSLLHWTRRFQIIRGIARGLVYLHEDSRLRIIHRDLKTSNILLDENMNPKISDFGLARTLWGDEAKGETRRVVGTHGYISPEYATRGFFSVKSDVFSFGVIILETISGKKNREYSGYHDLDLLGHAWRMWCEKTPLELIDKPLTDSIVVAEPEILRCVQIGLLCVQERADDRPTMSAAILMLNGEKTLPEPKEPAFYPHQSGSSSGSVVLHSKNEVSITLLQAR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02732 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 766 - -
Vifa1g02732 817 Pfam Protein tyrosine and serine/threonine kinase 504 769 IPR001245 GO:0004672|GO:0006468
Vifa1g02732 817 CDD PAN_AP_plant 332 419 - -
Vifa1g02732 817 Gene3D Phosphorylase Kinase; domain 1 476 578 - -
Vifa1g02732 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 783 - -
Vifa1g02732 817 Gene3D - 20 145 IPR036426 -
Vifa1g02732 817 ProSiteProfiles PAN/Apple domain profile. 336 419 IPR003609 -
Vifa1g02732 817 SMART ntp_6 339 418 IPR003609 -
Vifa1g02732 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 335 418 - -
Vifa1g02732 817 Pfam D-mannose binding lectin 71 174 IPR001480 -
Vifa1g02732 817 Gene3D Hepatocyte Growth Factor 336 417 - -
Vifa1g02732 817 CDD STKc_IRAK 509 777 - -
Vifa1g02732 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Vifa1g02732 817 SMART blect_4 29 148 IPR001480 -
Vifa1g02732 817 Pfam PAN-like domain 336 404 IPR003609 -
Vifa1g02732 817 CDD B_lectin 31 148 IPR001480 -
Vifa1g02732 817 SUPERFAMILY Protein kinase-like (PK-like) 487 775 IPR011009 -
Vifa1g02732 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 145 - -
Vifa1g02732 817 SMART serkin_6 503 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02732 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 179 IPR036426 -
Vifa1g02732 817 ProSiteProfiles Protein kinase domain profile. 503 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02732 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Vifa1g02732 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 578 - -
Vifa1g02732 817 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Vifa1g02732 817 Gene3D Transferase(Phosphotransferase) domain 1 579 785 - -
Vifa1g02732 817 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02732 Vifa-Chr1 426391448 426394604 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02732 428 792 Receptor kinase-like Gene Family AT4G23190 50.928 1.01e-119 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g02732 PK_Tyr_Ser-Thr 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02732 - - ccaj:109805721 1181.78