Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02722 ATGAGACAAGCAGGTGCATATTCAAGTTTACTAAGTGGTGGAATATCAGGAAGAACAGGTCCACATTCATTACCTTTAGCAAGAATAAAGAAGATAATGAAAAACTCAAGTGAAGATGTGAAGATGATATCAGGTGTAGCTCCAATTGTTTTCTCTAAAGCTTGTGAGCTTTTCATTGAAGAAATTACTAGGAGGTCTTGGATTATGGCGATTGATGCTAAAAGAAGAACTTTGAATAAAGAAGATGTTGCTTCTGCTGTTATTGCCACTGATGTTTTCGATTTTTTGATCACTTTGGTTTCGAATTCTGAGACTGGTTTGGTTGCTTGTGGTGAAACTGATGACACTGTCTTGCAAATGGAAACTATTTGA 372 0.3629 MRQAGAYSSLLSGGISGRTGPHSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEEITRRSWIMAIDAKRRTLNKEDVASAVIATDVFDFLITLVSNSETGLVACGETDDTVLQMETI 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02722 123 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Vifa1g02722 123 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 104 - -
Vifa1g02722 123 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Vifa1g02722 123 Gene3D Histone, subunit A 14 102 IPR009072 GO:0046982
Vifa1g02722 123 FunFam Nuclear transcription factor Y subunit C 11 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02722 Vifa-Chr1 425152952 425153323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02722 22 104 CCAAT-HAP5 Transcription Factor Family AT3G48590 62.651 9.28e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vifa1g02722 CBFD_NFYB_HMF 2.1e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02722 - - ccaj:109817175 187.578