Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02704 ATGTCACGACGAGGTACTGCAGAAAAAAAAATCGCAAAATCCGATCCAATTTATCGTAATCGAGTAGTTAACATGTTGGTGAACCATATTATGAAACACGGAAAAAAATCATTGGCGTATCTAATTATCTATCGAGCTCTGAAAAGGATTCAACAAAAGACAAAAACAAATCCACTATACGTTTTACGTCAAGCAATACGTGGGGTAACTCCCAATATAGGAGTTAAAGCAAGACGCGTGAGCGAATCGACTCATCAAGTTCCCATTGAAATAGGATCGACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGCGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGTGATGCCATACGCAAAAAGGAAGAGACTCAGAGAATGGCGGAGGCAAATAGAATTCTTGCACATTTTCGTTAA 468 0.406 MSRRGTAEKKIAKSDPIYRNRVVNMLVNHIMKHGKKSLAYLIIYRALKRIQQKTKTNPLYVLRQAIRGVTPNIGVKARRVSESTHQVPIEIGSTQGKALAIRWLLAASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETQRMAEANRILAHFR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02704 155 ProSitePatterns Ribosomal protein S7 signature. 20 46 IPR020606 GO:0003723|GO:0003735|GO:0006412
Vifa1g02704 155 FunFam 30S ribosomal protein S7 1 155 - -
Vifa1g02704 155 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 3 155 IPR000235 GO:0006412
Vifa1g02704 155 SUPERFAMILY Ribosomal protein S7 1 149 IPR036823 -
Vifa1g02704 155 Gene3D Ribosomal protein S7 domain 1 155 IPR036823 -
Vifa1g02704 155 CDD uS7_Chloroplast 9 154 - -
Vifa1g02704 155 Pfam Ribosomal protein S7p/S5e 1 149 IPR023798 -
Vifa1g02704 155 Hamap 30S ribosomal protein S7 [rpsG]. 1 155 IPR005717 GO:0003735|GO:0006412|GO:0015935
Vifa1g02704 155 NCBIfam 30S ribosomal protein S7 3 155 IPR005717 GO:0003735|GO:0006412|GO:0015935
Vifa1g02704 155 PANTHER RIBOSOMAL PROTEIN S7 5 149 IPR000235 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02704 Vifa-Chr1 424978918 424979385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02704 21 149 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 33.088 1.30e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02704 K02992 - sly:3950463 270.011