Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02703 ATGAACATTAGAACGATTATAATTTTCTATGCTTATCATATACTTATACATGTTCCACAAGTTTCTCTAGCATTTGAATCAATATCTCAGTCCATTTCCCTCGTAGATGATGGAAACACCTTAGTTTCCAAAGGTGGAACCTATGAACTTGGATTCTTCACCCCAGGAAATTCCAATAAACGATACCTTGGAATTTGGTACAAGAAAATTCCAATTCAAACAGTGGTTTGGGTTGCAAATAGGCTCAATCCAATCAATGATTCATCTGGAACATTAACCTTAAACAATGGCAACCTTGTTTTAACTCAGAATAATGAAACTGTTGTTTGGTCTACAACATCAAATTCTTACAATAAGCCAGAGAATCCAGTGGCACTTCTTTTAGATTCGGGTAATCTTGTGATACTAGATGAGAAAGAAGAAAACAAAGAATTGTACTTGTGGCAAAGTTTTGATTATCCAACAGACACTTTCTTACCAGAAATGAAGTTTGGTTTGGATTTTCGAACCGGTATAAATCGCCGTTTAACAGCTTGGAAGAGTCCTGATGATCCATCACCTAGTGATTTTTCTTTTGGTATGGTTCCACATAACTATCCTGATGCATATATGATGAAGGGTGATAAGATATTCTACAGAAGTGGACCATGGAATGGTTTGCATTCAAGTGGTTCACCACAAGTTAAGCCAAATCCAATTTATGATTACAGGTTTGTTTACAATAAGGATGAACTTTACTATACTTACAGCCTCAAAAACTCGTCTGCAATGACGCGGTTAGTTTTGAATGCAACCGCGTATGTTCGTTATCGTTACATATGGATCGAATCAGCGAAAAGGTGGGAAATCTACACATCGGTGCCATTGGATTTATGCGATAGTTATAAACTTTGTGGAGCTTATTCAAGCTGTGTTATTTCTGATTCGCCCGTGTGTCAATGTATGGAAGGTTTTAAGCCCAAGTCTCTGCAAGCGTGGTATTCGATGGATTGGTCTAAGGGATGTGTCCGAAATAAGGCGTTACGTTGCGAGGACAATCAAAAAGATGGATTTGTGAAAATGAGTGGTGTGAAAGTGCCTGACACTACATATAGTTGGTTGGATCAAACACTTGGTTTGGAGGAATGTAGAGTTAAGTGTTTGGAGAATTGTTCTTGTATGGCTTATGCAAATTCTGATGTAAGAGGAGAAGGAAGTGGATGTGCTTTGTGGTTTGGAGATTTGATTGACATTAGACAGTTTGCAGCTGGAGGGCAAGACTTATATGTTAGAATGGATGCTTCAGAGTTAGGACATGTCAATGAGGGTCACAAGAAGAAAGGTGTGTTAGTGGCAGTAACAGTAACAGTTTCTCTTGTCATGGCAATGCTTTCTGGTATACTTATGCTTGGTTGGTGTTATAGACATAAATCACAAAACAATGTAAAAGATAAGTCAGATTTCAGTATCAAAGGTCACCTAAAGAGTGGAATTCAAGTGGATGATGGAGATCTACCGGTCTTTAACTTGTCAACAATAGCAAAAGCCACTAACAACTTTACATTCAGCAACAAAATTGGAGAAGGTGGATTTGGACCTGTATATAGGGGGATTCTAATAGATGGAGTGGAAATTGCTGTGAAAAGGCTTTCGAAAAACTCAGGCCAAGGATTGAATGAGTTTAAAAACGAAGTGAAATTGATAGCGAAACTTCAACACCGGAATCTTGTAAAGCTTCTTGGTTGTTGCCTTGATGAAGAAGAAATAATACTGGTTTATGAATACATGCCTAATAGTAGCTTGGACTCATTCATTTTTGCAGATAAGCTGAAAAGTGAATTACTAAATTGGTCAAAGCGTTTCGACATTATATGTGGTATTGCAAGAGGACTTGTGTATCTTCATCAGGATTCGAGACTAAGAATTATACACAGAGATCTAAAAGCTAGTAATGTTTTACTAGATAAGGAATTGAATCCTAAAATTTCAGATTTTGGTATGGCTCGTATTTTTGGAGGAGATCAGAATGAAGAAAACACAAGGAGAATAGTCGGAACATATGGTTACATGGCACCAGAATATGCCATTGGCGGTCTATTTTCAGTGAAATCAGATGTATTCAGCTTTGGTGTTTTGTTGATGGAAATTATATCAGGGAAAAGAAGTAGAGGTTACTATAATCAAAACCAAAGCCATAATCTCATAAGCTATGCATGGAAATTGTGGAAAGAAGGAAGACCAATAAAATTGATTGACAAGAGCATAGGAGAAACTTGTTTTATATCACAAATATTGCATTGTATTCATGTTAGTCTCTTGTGTGTTCAACAGAATCCAGAGGATAGGCCTATAATGTCATGTGTGATCCTAATGTTGGTGAGTGAGTTTGAATTGGCTGAACCTAAACAGCCAGGATTCTTTATGAAAGATTCAAGTGAAGCAGACTCCTCCACAAATAAACAGATGTTGAGTTCTACAAATGAAGTAACCATGACACTATTGGAAGCTAGATGA 2493 0.3718 MNIRTIIIFYAYHILIHVPQVSLAFESISQSISLVDDGNTLVSKGGTYELGFFTPGNSNKRYLGIWYKKIPIQTVVWVANRLNPINDSSGTLTLNNGNLVLTQNNETVVWSTTSNSYNKPENPVALLLDSGNLVILDEKEENKELYLWQSFDYPTDTFLPEMKFGLDFRTGINRRLTAWKSPDDPSPSDFSFGMVPHNYPDAYMMKGDKIFYRSGPWNGLHSSGSPQVKPNPIYDYRFVYNKDELYYTYSLKNSSAMTRLVLNATAYVRYRYIWIESAKRWEIYTSVPLDLCDSYKLCGAYSSCVISDSPVCQCMEGFKPKSLQAWYSMDWSKGCVRNKALRCEDNQKDGFVKMSGVKVPDTTYSWLDQTLGLEECRVKCLENCSCMAYANSDVRGEGSGCALWFGDLIDIRQFAAGGQDLYVRMDASELGHVNEGHKKKGVLVAVTVTVSLVMAMLSGILMLGWCYRHKSQNNVKDKSDFSIKGHLKSGIQVDDGDLPVFNLSTIAKATNNFTFSNKIGEGGFGPVYRGILIDGVEIAVKRLSKNSGQGLNEFKNEVKLIAKLQHRNLVKLLGCCLDEEEIILVYEYMPNSSLDSFIFADKLKSELLNWSKRFDIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDKELNPKISDFGMARIFGGDQNEENTRRIVGTYGYMAPEYAIGGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNQSHNLISYAWKLWKEGRPIKLIDKSIGETCFISQILHCIHVSLLCVQQNPEDRPIMSCVILMLVSEFELAEPKQPGFFMKDSSEADSSTNKQMLSSTNEVTMTLLEAR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02703 830 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 28 775 - -
Vifa1g02703 830 Pfam S-locus glycoprotein domain 212 322 IPR000858 GO:0048544
Vifa1g02703 830 ProSiteProfiles PAN/Apple domain profile. 343 426 IPR003609 -
Vifa1g02703 830 Pfam PAN-like domain 343 411 IPR003609 -
Vifa1g02703 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 478 588 - -
Vifa1g02703 830 ProSiteProfiles Protein kinase domain profile. 513 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02703 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 151 - -
Vifa1g02703 830 SMART serkin_6 513 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02703 830 SUPERFAMILY Protein kinase-like (PK-like) 498 785 IPR011009 -
Vifa1g02703 830 Pfam Protein tyrosine and serine/threonine kinase 514 780 IPR001245 GO:0004672|GO:0006468
Vifa1g02703 830 Gene3D - 26 151 IPR036426 -
Vifa1g02703 830 CDD STKc_IRAK 519 785 - -
Vifa1g02703 830 CDD PAN_AP_plant 341 424 - -
Vifa1g02703 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 185 IPR036426 -
Vifa1g02703 830 SMART blect_4 32 154 IPR001480 -
Vifa1g02703 830 Gene3D Transferase(Phosphotransferase) domain 1 589 796 - -
Vifa1g02703 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 793 - -
Vifa1g02703 830 Pfam Domain of unknown function (DUF3403) 789 830 IPR021820 GO:0004674
Vifa1g02703 830 PIRSF SRK 1 830 IPR024171 GO:0004674
Vifa1g02703 830 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Vifa1g02703 830 SMART ntp_6 346 425 IPR003609 -
Vifa1g02703 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 342 425 - -
Vifa1g02703 830 Pfam D-mannose binding lectin 74 180 IPR001480 -
Vifa1g02703 830 CDD B_lectin 37 154 IPR001480 -
Vifa1g02703 830 Gene3D Phosphorylase Kinase; domain 1 475 588 - -
Vifa1g02703 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02703 Vifa-Chr1 424853512 424856677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02703 442 799 Receptor kinase-like Gene Family AT4G23230 53.760 1.81e-127 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g02703 PK_Tyr_Ser-Thr 4.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02703 - - gmx:100778155 1271.14